Cqua004586.1
Basic Information
- Insect
- Conops quadrifasciatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949752815.1
- Location
- OX457077.1:38335816-38338982[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.25 3.3e+03 -2.4 0.3 137 159 94 116 82 133 0.54 2 3 3.1e-90 4.2e-86 289.5 23.5 1 299 160 441 160 442 0.88 3 3 0.051 6.8e+02 -0.1 2.3 136 169 480 513 450 517 0.62
Sequence Information
- Coding Sequence
- atggaaaataacgaTTATGATGAAATCggtaaagaaattgaatttagcGATAGTGATTTAGAAGATGAATTTGAAGATTGCGACAGCGTTATTCAAACAAGTCATTTACAAAACGACCGCTTAACGgctgcaacaacagcaacatcaataCAAACGAAAGAAACAGAATCAGTTAAACTGATAAATAATATTGGCAACTTGTTACCAACTAAACTGGTAGAGACTGAAATTGGTATTTCGGCAGATGACGTAATTGTGGAAGatgttaataaaagaaaagatcaaaaaaattatacaaataaaaagaggGCGAATGATCAACTAATAGCGGCGGTGGAGAATACCGCAAACGATCAATTTGCTAACAGGAAGGACGGTGATGATGACGActatgaagatgatgatgatgatgattactACAGCGATGAACCAGAGGACGCGTTCATTGTTAAACTTTTGGGAGAGACAAATCGAATTgCCGAAGCTCGTCTATCGGCTCGGAGACAGGCTCGGACAGAAGCTCGTGAAATACGTATGCGAGAACTGGAGAAACagcagaaaaatttagaaCATACTTCTGTAGATCGGGCCCTTGACATACAACCTACCTTGGAACCATTATCGCGAACACATGTTGGAAATGGTACAAAAGGATACTCTATGTCACCTCATCGAAGCAGGGAGGATTCGTTGGAGGACGATGGAAATTTTACTTTGGGTGATCCCAGACAAGACTTAAAGGATGCCGAAGAACGTTTTCGCAAAGCAATGATAGCCAATGCACAGCTGGACAATGAGCGAGCTTCCCAAAGCTATCAAATACAACATTTGAAAGATCAGTTGGAGGAAATCGGAGAATCCAATATGCAATTGCAACGAGAGCTCAAGGAAAAAACCCGCGACTGTAATGGATTACAAAGAAATCTAGATAAACTGAGCGAAGAATTGAAGCTAATTAGCGGACAATTGAGTGAACGTGATGCTTTGATAATGGAGAAGGGTCTAGTCATAGTAACTGTAGCGAGTGATGACGGCACGGACGCTAAACGTACACTTATCACTGCAGAAAATGCGCAACTTTTAAGCTCAGTGCAGGGTTCATTAGATGTACGACTAAAAACATTCGTTGATGAAAAACAGCTCCTCATTGAAGAaattgaacttctaaaatcaCAGATAGATGAATATAAGTCCAGAGAATATGAATACCGTAATAATGATCAATTCATACAGTCTCAAGCGGAATTTGAAGCGACTAAAGAAGCTAACAAGATCATTTGTGATTACAAATTCCGATTAGAGAAAGCCGAGCAGGATATTGCTAATCTGCAAGCAAATCTGACACGATCGGAAGCACAACTAATGCGTTATAAAAATGCAGCAGAAGCTGCAGAAAGGGCTGAAGCCGAACTGAAAGGCGAACGTGGCAAATTGCAAAAGGAGaaTCGAGACAACGCCGAACACTTGAAGGAACTGGAAACATTAAATAATCATCTAAAGAAGAGACTagataaattaaataacattaGAAGTGCACTGCTTAAAGAATGttcataa
- Protein Sequence
- MENNDYDEIGKEIEFSDSDLEDEFEDCDSVIQTSHLQNDRLTAATTATSIQTKETESVKLINNIGNLLPTKLVETEIGISADDVIVEDVNKRKDQKNYTNKKRANDQLIAAVENTANDQFANRKDGDDDDYEDDDDDDYYSDEPEDAFIVKLLGETNRIAEARLSARRQARTEAREIRMRELEKQQKNLEHTSVDRALDIQPTLEPLSRTHVGNGTKGYSMSPHRSREDSLEDDGNFTLGDPRQDLKDAEERFRKAMIANAQLDNERASQSYQIQHLKDQLEEIGESNMQLQRELKEKTRDCNGLQRNLDKLSEELKLISGQLSERDALIMEKGLVIVTVASDDGTDAKRTLITAENAQLLSSVQGSLDVRLKTFVDEKQLLIEEIELLKSQIDEYKSREYEYRNNDQFIQSQAEFEATKEANKIICDYKFRLEKAEQDIANLQANLTRSEAQLMRYKNAAEAAERAEAELKGERGKLQKENRDNAEHLKELETLNNHLKKRLDKLNNIRSALLKECS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -