Canc051258.1
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- -
- Assembly
- GCA_948455865.1
- Location
- OX418218.1:40743441-40745395[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.62 1.5e+04 -1.5 0.0 26 46 64 84 50 92 0.79 2 7 1.1 2.9e+04 -2.3 0.0 21 43 87 109 81 112 0.79 3 7 0.00039 9.9 8.8 0.0 21 46 115 140 104 143 0.88 4 7 0.016 4.1e+02 3.6 0.0 23 44 290 311 283 315 0.89 5 7 0.0033 84 5.8 0.0 22 43 317 338 313 346 0.89 6 7 0.0004 10 8.7 0.0 21 47 387 413 377 418 0.86 7 7 0.0031 77 5.9 0.0 21 42 443 464 424 473 0.79
Sequence Information
- Coding Sequence
- ATGGTTGTGCTCCACACAAATAATCGTAGCACGGTGGTCAAATTTTCTATATCCATTTCTCTATTTCAGAAGAAGGAGAAAAGGAAGAGACGTCCAAATAAGCTATTTGAAGAGGAGCATGAAGTTGAAATCGCAAGACGAACAGTATCCAAGAAGCACACAAAGAAGCAAAGAAAAAAAGGTTACTATGAGTGCACTCTCTGTGACAAAACGTTCGAGCTGAGTTGGAATTTAACACACCACATTCGTACACACACTGGTGAAAAGCCTTACAAGTGCGAATATTGTGATAGGTCATTTAAGCAGCTCGGCCATTTGCAGGCACATACCAAATCTCACACAGGAGAGCGTCCCCACACATGCTGGATGTGTGGGAAAGGTTATACAACTCCCAGAAATTTGCGCTTACACATGGATGTTCACTCGGAAAATTCGCTATTCAACTCGTCCAATAAATTATTCAGGTGTCAAACTTGTAGCTTCATTGCCAAATCGAAAGCAGGCTTAACACATCATGAGCATAGTCATCAAACTATCAGTTCCTCTAACATTAGTGCCAGTAGGAAAACATCACTTCAAAAAAACACTAAATCAAACACCAATAGAAGCGATCGTCTTTTCAAATGTTCTTACTGTTCTGAATCTTTTACTGATAGGTTTTTATGCAGTCGGCATGAAGATACTCATGTTGATGCCTTCAAATGTGTTATGTGTAAAAAACCATTCGATTCTGTTAATGCTCTAAATAAGCATGAGACATCTCACAGGGAGTTCAGTTTTGTAGATGGCGATCGCTGTATAATCTGTAATGAACTTTTCAATTCCAAAAATGAACTTATTGCTCATGTGTCGACCCACAATGAAATCAATCCTTTTGAGTGTCATATCTGTGACAAACGCTTCAAAACGGGGATGGGCCTCAGGAGGCACCTGATCACACACACAGACAACAAGCCTTTCACGTGTGAAATATGCAACAAATCATTCAACATGAAGGATAATTTGAATCGTCATAAGGCTACCCACAACAACATCAAAACACATGCAATCGCCACAGAGGATGGCTTCTACCGCTGCTCGTCTTGTCCATCACAATTCTCAAGTTTGTCTTCTCTCATACAACACCGACAGAGTCATGAAAATGGAAAGCACAATGATTCCACTGCTTCATTTACGTGTTCCATTTGCAAAAATGTCTACTCCAAATCAAGTAGTCTCGTTGAACATTTGAAGCTTCATAAAGAAATTAAATCTTATAAGTGTACTGTATGTGACAAGCCGTTTAGCCGGTTAAACAACCTTAAAGGTCATATGCGTGTACATAGTGGGGAAAAGCCATTCGTTTGCCCGATATGCTCTCAAAGCTTCAGGTATCGTAGCGGATTTACTCAACACTTCAAAACACATAAAGTTATGGCTCATGGAGAAGTTATTACACCTGACACAAAACTATGTGATGATGAAATATTTTTAGACAGTTCTACATTCCTCAACCAACTTCAAAACCTGTCAGAAGCACCATATAGTGAAATTATTATGGTGGAAGATATCAAACCTGTAATAGTCGATGATTATGAAAACTCTCCATCCTAA
- Protein Sequence
- MVVLHTNNRSTVVKFSISISLFQKKEKRKRRPNKLFEEEHEVEIARRTVSKKHTKKQRKKGYYECTLCDKTFELSWNLTHHIRTHTGEKPYKCEYCDRSFKQLGHLQAHTKSHTGERPHTCWMCGKGYTTPRNLRLHMDVHSENSLFNSSNKLFRCQTCSFIAKSKAGLTHHEHSHQTISSSNISASRKTSLQKNTKSNTNRSDRLFKCSYCSESFTDRFLCSRHEDTHVDAFKCVMCKKPFDSVNALNKHETSHREFSFVDGDRCIICNELFNSKNELIAHVSTHNEINPFECHICDKRFKTGMGLRRHLITHTDNKPFTCEICNKSFNMKDNLNRHKATHNNIKTHAIATEDGFYRCSSCPSQFSSLSSLIQHRQSHENGKHNDSTASFTCSICKNVYSKSSSLVEHLKLHKEIKSYKCTVCDKPFSRLNNLKGHMRVHSGEKPFVCPICSQSFRYRSGFTQHFKTHKVMAHGEVITPDTKLCDDEIFLDSSTFLNQLQNLSEAPYSEIIMVEDIKPVIVDDYENSPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365981;
- 90% Identity
- iTF_00365981;
- 80% Identity
- iTF_00365981;