Canc053118.1
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- Trl
- Assembly
- GCA_948455865.1
- Location
- OX418218.1:60861807-60863530[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-14 2.6e-10 42.7 0.2 18 48 3 33 2 36 0.94 2 2 1.6 4.1e+04 -2.8 0.0 4 13 85 94 84 103 0.66
Sequence Information
- Coding Sequence
- CTGAAACGAATGCCGTCAGACCAGCCGGCCGAGTGTCCGGTGTGCGGCGCGTTCATAAAGCAGTCGCGCAACCTGAAGCGTCACATTCAGATCAAACATCGAGACGTGCACATTCAGTTTGCTGTTCGTAAAAAGAGAAGAAAAACGTCGGCGATTAACAAAGCAATAGTAACAGCAGCAGTAGCAGACGATGAATTCAACGCTGCAGGGTTGAAAACTCGAAGAGGTCTTGAACAGTTGAAAGGTGCATGGAAACGCGCAAAAAAGGATTGTAAGTCACAGAAAGGAGGAGCAAATTCCGGACTGGAGAAGGGCCTCCATCACATGTAG
- Protein Sequence
- LKRMPSDQPAECPVCGAFIKQSRNLKRHIQIKHRDVHIQFAVRKKRRKTSAINKAIVTAAVADDEFNAAGLKTRRGLEQLKGAWKRAKKDCKSQKGGANSGLEKGLHHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -