Canc013362.3
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- -
- Assembly
- GCA_948455865.1
- Location
- OX418217.1:24524769-24527302[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-12 2.3e-09 39.2 0.0 3 42 93 131 91 133 0.91 2 2 4.5 2.5e+03 0.7 0.0 2 18 460 477 459 480 0.75
Sequence Information
- Coding Sequence
- ATGGAGAATCTAGTGATTGATCTAGTTTTTATAGAATATTTGGAAAATGCAGGTCCAGGAAGACATATCCCTCCAGATAGGAATAGTGATATTTTTTCAATGGATGAAAGTAAATTCATTGAAATAAATAGATTTAGAAAGAGTACCGTCAGTGATTCAAGACACGACAACGAAGATATTTCACAGGATTTTGAGCATAAAATCAACAGATTAGCCAAGCAGATTGAAGTTATGGAACCTGCAAAGAAGAAGAAGAAGTATCAAGACTACAGTCAAGATCTCCTGAACAAGGCATTAGCTGAAGTGAAAAAAGGAATGTCTTTTCGAAAAGCAGCAGGAAAGTTTGGAGTGTCAAAATCAACATTGAATCGGGCTGTGAATGAAAACAATATGGGAAAAGTGGGGCGCCCTTTTGTTTTTGATGAAGAAACTGAAAAGGTTTTAGTAGAATGTATAGCTCTAGCTGGTGATTGGGGGTTTCCTCTAATTCTTCATGATATTCGACTGATAGTAAAATCATTCCTTGACAGAAAAGGTGTTAATGAAGTTCGATTTAGAAATAATATGCCAGGTCGGAATTGGGCAAGTTCTTTTGTGAAAAGACATTCAGATCTCTTAACAAAAAGACTTTGCCAAAATATCAAAAGATCAAGAGCTGCAGTCAGTGTCGAAACTCTAAATGCTTACTTCGATGAGCTACAAACCACATTGAAGGATGTAGAGCCTCATCTCATCATCAATTATGATGAGACCAATCTAACAGATGATCCTGGGAGAAAGAATGTTATAGTTCGACATGGAACTCGTCATCCTGAAAGAATTTTGGACTCCTCGAAATCCAGTAATTCTGTGATGTTTTCTGGCACAGCTGCTGGAAACATGTTGCCTCCCTACATAGTTTACAGAGCTGAGAATCTATACAGTTCATGGTGTGAAAATGGGCCCAAAGGAACAATCTATAATCGGTCGAAAAATGGATGCACTGGCCTTTGCCAGCCACTTGATGTTGCTGTGTTTAAACCTCTAAAAGTCAAGTGGAGGGAGACTTTGGAGGAGTGGAAGAATAAGAATCGTGGTTCCATTTCCAAAGATGTCTTTCCTCAGCTTCTCAACAAATGCCTAGGTTTGATTGGTGAGGAAGCTGCTGAAAAAAACTTGAAATCAGGATTCAAGGCAGCAGGAATTTTTCCACTGGGTAGAGAGCAGGTTATGAAGAGACTGCCAAAAAAAAAGGCAATACCAGAGTATTTAGAAGAAGCTAGAAAAAAAGACACTGCCCCTCTAAAACAGTGGAAGAAAAAGCTCAATATAACTCCTGGGCAAATTGTAACACAAGACAGCCTCAAGCATAGTGAGCCAGTACCAAAGATTCTGATTCCTGAGGAATTTGATGAGGCTATCAGTAGTTCAAGTGAAGAGGAAGCAGTGAGTCAGCCTGAACCCAGCAGCAGTGGTGCTTCAAAAATAGTGAAAAATATAGGTGTTGACTCTTTTGTTGTTGTAGAGGTGTTGTACGATAAGGGAACCAAGAAAGAAAGTTTGAAGAAATTCATTGGAAAAGTGCTTTCAATTAATGGAGAGGACATTGAGGTAAAATTTTTCAGAAAATCCTCCAAAGCAATGAACATTTATTTTTTCCCTGAAATAGACGATGTTATGATTCTTAAGCAGAATCAAGTCATTGAAACATTGACACCCCTTAATGTATCTAGGGGGTGGTATACTTTTCCATATGAAATGTAA
- Protein Sequence
- MENLVIDLVFIEYLENAGPGRHIPPDRNSDIFSMDESKFIEINRFRKSTVSDSRHDNEDISQDFEHKINRLAKQIEVMEPAKKKKKYQDYSQDLLNKALAEVKKGMSFRKAAGKFGVSKSTLNRAVNENNMGKVGRPFVFDEETEKVLVECIALAGDWGFPLILHDIRLIVKSFLDRKGVNEVRFRNNMPGRNWASSFVKRHSDLLTKRLCQNIKRSRAAVSVETLNAYFDELQTTLKDVEPHLIINYDETNLTDDPGRKNVIVRHGTRHPERILDSSKSSNSVMFSGTAAGNMLPPYIVYRAENLYSSWCENGPKGTIYNRSKNGCTGLCQPLDVAVFKPLKVKWRETLEEWKNKNRGSISKDVFPQLLNKCLGLIGEEAAEKNLKSGFKAAGIFPLGREQVMKRLPKKKAIPEYLEEARKKDTAPLKQWKKKLNITPGQIVTQDSLKHSEPVPKILIPEEFDEAISSSSEEEAVSQPEPSSSGASKIVKNIGVDSFVVVEVLYDKGTKKESLKKFIGKVLSINGEDIEVKFFRKSSKAMNIYFFPEIDDVMILKQNQVIETLTPLNVSRGWYTFPYEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365575;
- 90% Identity
- -
- 80% Identity
- -