Cpun003330.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062079.1:12863735-12870574[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0044 0.34 12.1 0.3 2 23 233 255 232 255 0.94 2 12 3 2.3e+02 3.2 0.2 5 23 264 282 262 282 0.92 3 12 0.0014 0.11 13.7 3.6 1 22 315 336 315 338 0.89 4 12 0.086 6.7 8.0 0.3 5 23 347 365 345 365 0.95 5 12 0.011 0.88 10.8 2.0 2 23 372 393 371 393 0.96 6 12 3.4e-05 0.0026 18.7 1.9 1 23 401 423 401 423 0.97 7 12 0.00085 0.066 14.3 1.0 1 23 432 455 432 455 0.97 8 12 0.00026 0.021 15.9 0.2 1 23 461 483 461 483 0.97 9 12 1.4e-06 0.00011 23.1 4.2 1 23 489 511 489 511 0.98 10 12 0.00014 0.011 16.8 1.1 1 23 516 538 516 538 0.98 11 12 5.3e-05 0.0041 18.1 6.2 1 23 544 566 544 566 0.97 12 12 0.00027 0.021 15.9 2.1 2 23 573 595 572 595 0.95
Sequence Information
- Coding Sequence
- ATGGCTATGGAATTAAAAGAATTATGCAGGCTATGTGCTAAGAAGGATGATTTTACAAAGGATCTATTTGATGGAAATAACAAAAGtgttatgaaattaataaagGATTTAATTCAAATCAGTGTACATGAGAATGATGaattacctactaaaatatGTTTGAACTGCGAAGAAAAAATGGTTTCATTTCAACTATTTGTTTTGGAGTGTTTCAAAGCTCAGGAGACTCTAAAACGTATGTATTTAGAGGCAACCAATGTCAGGGTTAAACTTGAATCAATAGATTTTGGAGCACCATTGATCAAATCAGAGGTGAAGGATGAATTGCTGACTGAGGACATTGTTTTATtgggTGCTATTGACGAAAATCCAGTAACTGTCTATGAAAAAGGTGAAGATTTCGATGATTTTCCAAATGATGATTTGGATATTGATGATCACCACAATGAAGACGATGATGAGgaggacgatgatgatgaagatgatgatgatgatgacgaagattACATGGATAATGTGACATTAGCTTcactgaaaaaagaaaaagtgcAGGATATTGCTGACACACCTGTTAAAACTGAAAAAGAGAAAGTAAAACGttataaaacatataaaagaaaaacaatccAGGACACAGCAGAAGTTGAGAAAGTTCTCCAAAAAGCTGACTGGAAAGTAAGAGATTTTGTAAAACTACAGTGTGATATTTGTGAGCAGAAAATGAAGTCTTGGAGTGAATTACGTGTCCATTATTACAAAGTGCATAAGAGTAAACCATTGGTTAATTGTGTATGTGGCTTTGTCATCAGATCAAAGAGTGTTCTCTACAAGCATGTATCTGATCACAAAATACGTAGCCAAAAAGCAAGTGGGTTGGAAAATGAGACTAAAAATGAAGCAGATACAAAATATTCCAGCCTCAAAATCAATGATTTTGTAACgtTTAATTGTACAATCTGTCAAAAGAAGTGCACAAGCTGGTACAGCTTGAGATCTCATAGTGAGGAGAAACACAATGTGGCCCCCGTGGTGCAGTGCATTTGCGGGATTACTTTAAAGTCCAAATCTGTTCTCTACAAACACATTCAAGATCACAAAAATCCAAATATGTTGtgcTGTGACAAGTGTCCAAGAATAACGAAAACTATAGAAGCCCTTAACAAACATAAGATGCGACATATACCAAAATCAGAGAGGAAATTCTGTTGTGCTACatgtgataaaatatttataacaaaagaCGCTTTGAAATCTCATGAAAGATCTCACATTCCTATTGAAGACAGAAAAATATACCATTGTGGAGTGTGTGACTTGAAATTCACGACACGGTCGTCGGCCGCGTCGCACAAGCGGGTGGTGCACGACAAGATCAAGAGTTACGTGTGCGACCTGTGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGCCAGCACCGCGCCATACACAGCGACGAGAAGCCCTTCGTCTGCAAGACCTGCTCTAAACCGTTTAAAACCCACTCAAATCTCAAGACGCATATGGACACTCACGAGGACACGTCGTACCAGTGCTACGTGTGCAACCGCGTGTTGAACAGCCGTCGGACGCTGCGCAAGCACTTGCTGGTGCACGAAGAGAAGTGCAGGCACGTCTGCTCCTACTGCCATAAAGCCTTCAAGCGGCGGCAAACGCTCAAGGTTCACCTGTACACGCACACGGGCGACAAGCCGCTGACGTGCAAGTGGTGCGACGAGCGGTTCGCGTACGCGTCTACGCTGCGCTCGCACCGGTTGCGCTGCCACCCCGACAAGATGGCGGCGCAGGCGACCAACTCGTACGCGACTTACGCGCACGTACCGGTCAACGTACAAgacGAATACATAAAGAATGATGTGACAGCTAATGCAGTTAACATTGCAAAAAATGAAGCAGAGGCTATGTAG
- Protein Sequence
- MAMELKELCRLCAKKDDFTKDLFDGNNKSVMKLIKDLIQISVHENDELPTKICLNCEEKMVSFQLFVLECFKAQETLKRMYLEATNVRVKLESIDFGAPLIKSEVKDELLTEDIVLLGAIDENPVTVYEKGEDFDDFPNDDLDIDDHHNEDDDEEDDDDEDDDDDDEDYMDNVTLASLKKEKVQDIADTPVKTEKEKVKRYKTYKRKTIQDTAEVEKVLQKADWKVRDFVKLQCDICEQKMKSWSELRVHYYKVHKSKPLVNCVCGFVIRSKSVLYKHVSDHKIRSQKASGLENETKNEADTKYSSLKINDFVTFNCTICQKKCTSWYSLRSHSEEKHNVAPVVQCICGITLKSKSVLYKHIQDHKNPNMLCCDKCPRITKTIEALNKHKMRHIPKSERKFCCATCDKIFITKDALKSHERSHIPIEDRKIYHCGVCDLKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDEKPFVCKTCSKPFKTHSNLKTHMDTHEDTSYQCYVCNRVLNSRRTLRKHLLVHEEKCRHVCSYCHKAFKRRQTLKVHLYTHTGDKPLTCKWCDERFAYASTLRSHRLRCHPDKMAAQATNSYATYAHVPVNVQDEYIKNDVTANAVNIAKNEAEAM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01071841; iTF_01503212; iTF_00752307; iTF_00961206; iTF_01504111; iTF_00408689;
- 90% Identity
- -
- 80% Identity
- -