Cpun024019.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062105.1:4580309-4583479[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.052 4.1 8.7 0.3 1 20 75 94 75 98 0.87 2 18 8 6.2e+02 1.8 0.5 3 23 128 149 128 149 0.91 3 18 6.5 5.1e+02 2.1 1.2 2 23 172 193 171 193 0.76 4 18 0.0013 0.098 13.8 0.2 1 23 197 219 197 219 0.95 5 18 0.0038 0.3 12.3 0.3 1 23 224 247 224 247 0.92 6 18 0.0015 0.12 13.5 4.4 1 23 253 276 253 276 0.95 7 18 3.7e-05 0.0029 18.6 0.2 1 23 283 306 283 306 0.98 8 18 1.9e-05 0.0015 19.5 0.9 1 23 312 334 312 334 0.96 9 18 4.1e-07 3.2e-05 24.8 1.3 1 23 340 362 340 362 0.99 10 18 0.028 2.2 9.5 0.3 1 23 496 519 496 519 0.96 11 18 0.064 5 8.4 0.0 3 23 545 565 543 565 0.96 12 18 0.054 4.2 8.6 0.1 1 23 589 611 589 611 0.96 13 18 0.0006 0.047 14.8 0.2 1 23 615 637 615 637 0.98 14 18 0.00084 0.066 14.3 0.5 1 23 642 665 642 665 0.95 15 18 0.0068 0.53 11.5 0.4 2 23 672 694 672 694 0.93 16 18 0.027 2.1 9.6 6.3 1 23 701 724 701 724 0.96 17 18 5.1e-05 0.004 18.2 4.9 2 23 731 752 730 752 0.96 18 18 2.4e-05 0.0019 19.2 0.9 1 23 758 780 758 780 0.99
Sequence Information
- Coding Sequence
- ATGTCAAACGAAAATAAAGGAGATCGATGCTCAAGCACGTTTATTTTCTCATTTTTAGGTGGCGATCTTTTGCCGCCAGACGAGATCAAATCAGCAGTAACAGAGTCGTTCAATGCTGAACAGAAGAAGACTTTAAATGACGAATTGAAGGCCAGAAAGAAACGAGCCACATTGCTACTCGAGTTCTCCAGAATATGCCCATTCAGATGGATGAGAAACTTGTACTTGTGTTTCTATTGCGATCAGCAATACGCAGACCCAGCCATGCTAAGAGAGCACAATTCGTTCGAGCACAGATCCCAATCGTCTCTAGAAATCAAGCAGGCCATTGCGAAACTCAAGAAATATGAACTGATCAAAGTGGATATCACAGACGTCGGCTGCAAAATCTGCAATGATTACATCAATGATTTCACTGAGCTGAAATCTCATTTGCTCATCAAACACAAGAAGAACATAGACGCTAAATCCAGTGACGGAGTTCTGCCATTCAGAGTTACTAAAGATGACTTTGAATGCGCAATGTGCTGTGACAAGTATGCGGAGTTCAAGACTCTCAATCAGCATATGAATGTGCATTTTCAGAACTTTATCTGCGAGCAATGCGGGACAGGTTTTATTACACCTGAGAGGTTAAGAACTCACGCCTTCTCACACGAGAGTGGCTCCTTCGCTTGCGACGGTTGTGATAAAGTGTTCAAGTCCATGAATTCCAAGAATGAGCATTACGCATCGGTTCATATGCAAGTGAAGAGGCATAGATGCCCACACTGCCCGGAGACTTTCAGAAACTACTTCCAGAGGAACAAACACATATCGAATGTTCACGGCCTAAAATTGAAGGAATTTAAGTGTACGATGTGTCCTAAGGTGTTTACGTTGAGCGGGAAACTGGGAGTCCATGTTAGGACAGTGCATTTGAAAGTAAAGAGGCACGCTTGCGAAGTTTGTGAATGGAAGTTTTATTCTAAGTCCGAGTTGAGGGAACATATGATTCGGCACGGGGGTGAGAGGAAGTTTCAGTGTAACGTTTGCAAGAAAGCCTACGCTAGGAAGTATACTTTGAGGGAGCATATGCGGATACATGATAATGATAGGAGATTTGTATGCACGACTTGTGgAGCCGACGAGGCAATTTTACCGGATAAAACTGTGAAGAGAAACGTCGTGCCACTATTTCAAGTGGCGTACGATCGCACCTTGTGTAGGCCTCTGGGGACGTTAACAGACTTCAGTAAGCTCAAAAGAAAGCAGGCGTCCCATATGTCGGCTGTGACAAACATTTTCACTCCGTCACGAAGCCCGTCGCCTATTTCCATGGGAGAAAGATCGCCGTCTCCGTTCAAAGAAACCGCACCACCAGAAATTCATCAAACAGTCATCAGCGCTCCTAAACTGAAAGAAAAGAATCCGGACGTACGCCAGAACGCCTTGACTATCTTCGAATTCTCAACCGTGTACCCCTTCATTTACGGAAACAACAAGTTCAAATGCTTCATCTGTTCCCAGCCGTTTTTAGAAACATCTCTACTCAGGATACACATGAACGAAGCTCACACCTTTGCCCCGTTAAAAAGATTAGTCAACAACAGAAGGGAGAACATTCTCAAGGTCGACGTGAGCGAAATCGCTTGCAAAATTTGCTCGATACAACTTCCGAGCTTGGCTGAACTGAAGAGTCATTTAAAAGGCCACGATAAACCTATAGATCCTGATTTAAAAGACAATATAATTCCCTTCAAGTTGGAAGCGACAGACGGCGGTTACAAATGCGTTATCTGCGACGAAAACTTCATCAAAGTACGCATCTTGGTTATTCACATGAGCGTACATTTCAATAACTACAGCTGTGAAGTTTGCGGATCTGGTTTCATGACTTTAAGGCTTCTGAAGAAACATTTGGAAGTGCACGAGAGTGGAAACTTTGCTTGCGACAGATGCAGCAAAGTGTTCAGTACGGCTTACAAGAGAACTTTGCATATAAGAGGCGTGCATATGAAGCAGTATCCGCGTCGATGCCCAATGTGTCCGGAACGTTTCAACTCGAATTATAAAAGGACGATACACTTGCAAGACGTGCATAATCAGTCGACTAGAGTGCACAAGTGTGAGACATGCGGGCGAGCTTTCAATCTGAAGTATCATTTGATATGCCACACTCGATCTGTGCATCTGCAGGAGAGGAATCAGCAATGCGATATCTGTCACCAGAGGTTCTGCAATAAGGAAACATTGAAGAGGCATATGGTTATACATACTGGGGAGAAGAATTATAAGTGCAATGTGTGCGGAATGGCTTTCTTGAGGAGGAAGAATTTGAAAGATCATTTGCGGTTGCATGAGATGGGATGA
- Protein Sequence
- MSNENKGDRCSSTFIFSFLGGDLLPPDEIKSAVTESFNAEQKKTLNDELKARKKRATLLLEFSRICPFRWMRNLYLCFYCDQQYADPAMLREHNSFEHRSQSSLEIKQAIAKLKKYELIKVDITDVGCKICNDYINDFTELKSHLLIKHKKNIDAKSSDGVLPFRVTKDDFECAMCCDKYAEFKTLNQHMNVHFQNFICEQCGTGFITPERLRTHAFSHESGSFACDGCDKVFKSMNSKNEHYASVHMQVKRHRCPHCPETFRNYFQRNKHISNVHGLKLKEFKCTMCPKVFTLSGKLGVHVRTVHLKVKRHACEVCEWKFYSKSELREHMIRHGGERKFQCNVCKKAYARKYTLREHMRIHDNDRRFVCTTCGADEAILPDKTVKRNVVPLFQVAYDRTLCRPLGTLTDFSKLKRKQASHMSAVTNIFTPSRSPSPISMGERSPSPFKETAPPEIHQTVISAPKLKEKNPDVRQNALTIFEFSTVYPFIYGNNKFKCFICSQPFLETSLLRIHMNEAHTFAPLKRLVNNRRENILKVDVSEIACKICSIQLPSLAELKSHLKGHDKPIDPDLKDNIIPFKLEATDGGYKCVICDENFIKVRILVIHMSVHFNNYSCEVCGSGFMTLRLLKKHLEVHESGNFACDRCSKVFSTAYKRTLHIRGVHMKQYPRRCPMCPERFNSNYKRTIHLQDVHNQSTRVHKCETCGRAFNLKYHLICHTRSVHLQERNQQCDICHQRFCNKETLKRHMVIHTGEKNYKCNVCGMAFLRRKNLKDHLRLHEMG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00408647;
- 90% Identity
- -
- 80% Identity
- -