Cvac004209.1
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411343.1:9309068-9351423[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-05 0.41 11.4 0.4 21 48 689 718 677 733 0.85 2 3 0.061 1.6e+03 -0.2 0.0 27 44 981 998 977 1003 0.87 3 3 3.6e-05 0.95 10.2 0.0 24 52 1006 1034 1002 1035 0.94
Sequence Information
- Coding Sequence
- ATGCCTCCCAGACGACGGTATTCCAATCAAAAATATCTTGAAATGGTATTGTGCTACCGCGAGTGTAACTCCATAACTGCGCATGCAGTAAACTTATACCAGCAGAGGTTTGGTGTGCGAGTGAGTCATCATACCATTCTGGATGCAGTGTACAGATTTAGAGAACACGGCCGCTTTGACCCGCCTCCGGTTGACGCAGGCAGGCCTCCATTTTCTGCTGAACTCGAAGAAGAAGTGTTGGACTTCTTCCGGCGTCATCCTCTTGCGAGCACCAGGGATGCTGCTCGAGTCTTCGACGTGAGCGACAACTACGTGTGGCGACTTTTAAATCGGGAAGGGCTCCACCCTTACCACTTCACAAGAGTACAAGAGCTGCATCCTCATGACTACGCGGCTCGCCTCGCGTTTTGTAATTGGATTCGAGAAGAACGCCGCAACATTCTGTGGACTGACGAGTCCACATTCACACGGGTTGGTATGTTCAACATACACAATGCGCATTATTGGACTGAGGCGAATCCTCGTGTTGTGCGGCCTGACCACTTTCAGACTCGGTTCAGTGTTAATGTGTGGGCCGGGATACTCGGCAACATAATTCTAGGACCAGTGTTCTTGGACAGACTGAACGGAGACACGTATCTGCGCTTACTACGAACCCGTGTGAGAAGAATGTTGGAACGTATTCCTCTTGAACAGATAAGAGGACTGCACTTTCAACATGATGGAGCACCTCCTCATTTCGCCATCAGCGTACGGGATTTTTTAAACGGTGTGTGGTACGGCGGTGAAACTTGGATAGGCCGAGGAGGGCCAGTGCCGTGGCCTCCTCGCTCGCCCGATTTAACCCCTCTAGACTTTTTTTTGTGGGGTCGTGTAAAGGACCTTGTGTACGGCCAAACCGGACATGACATTAGAAGTGTGGAAGAACTAAAAAGGCGCATCAAACGCGCATTTAGACAAGTAAAAAGTGAAACGGACACATTAATTAAAGTTAAGCGACATCCGAGAACGGACGCAAACGGACTACGGACGGGTATCTGTTGGGAGTGCACTGCACGGCTGCGGTCAGCCGCTTCCTTCAGATCTAAAGTGCTACTCAGCGATGCATTGCTGCAAGATCATTTGAAGAACAATGCTGATGTAAAAATAAGCGACATACTTAACATACATCGCACACATACTAATCTAAAACGAACATGGACTGTGCAACAAGTATTCAAATTCAACAGCCACAACGTTGAAGAACATACTCCGAGCACGTTAATAAAAACAGAAGTTATAGGCATACCGCATAACGAAGAAATTGAAATAGAAGTACAAAACTTAGTCACAGACAAAATTACTATAAAAGATGAACGAAGAAACGAAATAATTGTAGAGACTTATCCTAACGCTGATGTGAAAACCGAAATCGATCTAATACCTATAACCCAAATTGATGTTGGTGCAAAAGAAACCGATTTTGAAGACGATAAAGATGATTGTGATGTAGTTACAGAAAATATTTATGTGAATGATGCGAAAATATGCTTTGATAATGTAGTCTTGATTAAAAATGAGGAAGAAGTTGATCCAATGAATCTCTCTAAACATATAGCTGATGCTGATGACAATGATGAACAAATGGATCTCTCTAAGAGTATAGACAGCGATGACGAGGACCAAGTAGCTGTAAATGATGACGTTTGTGATGACGATGATCAAAGTCATGTAAATGATAAAATAATTACAAACGTCGCGAATGAAGCAATTGTTTGTAAAGAGGAGAAAGCAACTAAAGTTAGAAAGAAAAGAGCTGTTGTTAAAAGAAAGGCAAAGAAAGATGATGATGTTATTATATGGGTGAAAGGAAGACCGAAGAAGAATAAACAGCCTTATGTGAAACCTACTATACCCATTGACGAGAACGTTTTCAAAATTAAACCTTTGAATCATGATGAGTTGAGGCGGGAAGTACTTGACAGACGGGAATGTGAAAAATATAGACGGGCACCTTTCAAGTGTGATGTCTGCTTTAGAGGATTCCCGACCAAGGATAAGCAAGAAAGACATGTGATCAAGCATAGCGAGCAAAGCGGTTCCCTAAAGTGTAGCATATGTTATATCCGTGTAAAAAAAGGAAGGCGTCTGCGCGCGCACATAGCAGGTCAACACACAACGGAGTTTACATGCAAACTGTGTCCGTTGGTCACAAGGAGTAGAACCGTCGCAATAGGACACATGAAGTATCACGCCGGCAGCAAGTATAAGTGTCCGCAATGTTCCCTTGAGTTCGATAAAAAAACAACGTTACTAAATCATCAGCGTCTGAAGCACATGTCGGCTTGTGTCTGCGAACTGTGTGGCTACACATTCATCGGTAAATCTGGTGTGGAGGCACATAAGAGACTGAGGCACAAATTTTTTGATAATAACACTGTATTCGAGGGGCCAAACTGTGATGTTTGCGACGTCAAGTTCTTAACGACGAAGGCGTACGACAGACATCTGCGGTTGTCTTCCAACCATATCAAGGAGGATGACCCTAACCGTATAAGCAATGATCCCTCCATAAAGTCGAGGCGACTCGGCTCAGCCTGGGTGAACGCCAGCAGACGTCCGGTCATACATCCTAAGGACGTGGACAGTGTGCCAGCACCTAATGGACCCGTCACTTGTGAACAGTGTGGCGTAATACTGGAAAGTCTCGAGGTATACGCTGCCCACTTCAAGGACGCTCACCCGGGCAGCAACCGAACGCAATTCACGATAACGACAACACCTAACATGTGTGAGCATTGCGGGAAGTTCTTCCTGAACACAACCACCCTAGCCGACCACATGTGGGTCCACACAGGTCAGAACAGTTTCCAATGCGACCACTGCAACAAATCGTTCAGTAAGAAAGCGAATCTCGCCGATCATATACACCAGCACGAGTACGTACGACGCACGTACGACTGCGGCGTGTGCGGCAAACACTTCACGTTCAGCGGCAACCTCACCAGGCATTTGTTTGTCCACACCGGTCTAAGACCGTTCAAATGTGACGTCTGTGAGAAGACATTCCGTACATCCGGCGAGCTGCGCTCTCACATGGACTACGTTCATCTGAAGAAGCCGCGACCTAAGCGCGTGCGACGGAAGGGGAAGAAGTGTGAACTGAACAGCTTAGAGTATTGA
- Protein Sequence
- MPPRRRYSNQKYLEMVLCYRECNSITAHAVNLYQQRFGVRVSHHTILDAVYRFREHGRFDPPPVDAGRPPFSAELEEEVLDFFRRHPLASTRDAARVFDVSDNYVWRLLNREGLHPYHFTRVQELHPHDYAARLAFCNWIREERRNILWTDESTFTRVGMFNIHNAHYWTEANPRVVRPDHFQTRFSVNVWAGILGNIILGPVFLDRLNGDTYLRLLRTRVRRMLERIPLEQIRGLHFQHDGAPPHFAISVRDFLNGVWYGGETWIGRGGPVPWPPRSPDLTPLDFFLWGRVKDLVYGQTGHDIRSVEELKRRIKRAFRQVKSETDTLIKVKRHPRTDANGLRTGICWECTARLRSAASFRSKVLLSDALLQDHLKNNADVKISDILNIHRTHTNLKRTWTVQQVFKFNSHNVEEHTPSTLIKTEVIGIPHNEEIEIEVQNLVTDKITIKDERRNEIIVETYPNADVKTEIDLIPITQIDVGAKETDFEDDKDDCDVVTENIYVNDAKICFDNVVLIKNEEEVDPMNLSKHIADADDNDEQMDLSKSIDSDDEDQVAVNDDVCDDDDQSHVNDKIITNVANEAIVCKEEKATKVRKKRAVVKRKAKKDDDVIIWVKGRPKKNKQPYVKPTIPIDENVFKIKPLNHDELRREVLDRRECEKYRRAPFKCDVCFRGFPTKDKQERHVIKHSEQSGSLKCSICYIRVKKGRRLRAHIAGQHTTEFTCKLCPLVTRSRTVAIGHMKYHAGSKYKCPQCSLEFDKKTTLLNHQRLKHMSACVCELCGYTFIGKSGVEAHKRLRHKFFDNNTVFEGPNCDVCDVKFLTTKAYDRHLRLSSNHIKEDDPNRISNDPSIKSRRLGSAWVNASRRPVIHPKDVDSVPAPNGPVTCEQCGVILESLEVYAAHFKDAHPGSNRTQFTITTTPNMCEHCGKFFLNTTTLADHMWVHTGQNSFQCDHCNKSFSKKANLADHIHQHEYVRRTYDCGVCGKHFTFSGNLTRHLFVHTGLRPFKCDVCEKTFRTSGELRSHMDYVHLKKPRPKRVRRKGKKCELNSLEY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00364377;
- 90% Identity
- iTF_00364377;
- 80% Identity
- iTF_00364377;