Clon011601.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Condylostylus longicornis
Gene Symbol
Hr39
Assembly
GCA_029603195.2
Location
JAQSLO010000046.1:841571-844708[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 3 2.9e+04 -9.9 14.8 42 205 47 214 8 220 0.63
2 4 3 2.9e+04 -16.9 20.9 43 127 186 278 177 480 0.65
3 4 2.5e-09 2.5e-05 24.6 0.0 1 39 577 619 577 629 0.79
4 4 2.7e-74 2.6e-70 238.6 11.3 146 408 623 916 605 916 0.90

Sequence Information

Coding Sequence
atgttaacaaatGATGGGGATTTATCCCCACAACAGacaacaacatcatcatcatcattatcatcattaggTAGTATTAATGCAACAGCGGTAATTAATGGACCAAATTcaactaatattaataatttatcacatcaacaacaacatcagCAACAACAAATCACTAGCGTTCCACATTCAGCAATCATTCGAAATAATATTTCggtaacaaatattaaatgtgaAGATAATCTCATTCCAAAtggattattaaataattcaatacaacaacaacaacaacaatcatcGTCAACAATAACACCAATTCAGACAACAGTTAATAACTATTATAATGGAATACCTCAATCAACAACGACTGCACCGAGTGGAATTAGTGGTAGTGGTAGTATTAGAATAGCAGTGCCTAAAGTTGAAGAATCTGATGATGAATCAGAATCTGAactttcaaatattgaaaatttaaaagttagtcgacgttcaaataataataaaaataatgggcCAAGACCAATGTCATGGGAAGGTGAATTatcagaaaatgaaaatgaattaatgGAAACTGATCAAAATCAACATCATCACaatcatcataaaaataataatagcagtaataataataataataataataataataatgataatctccatcatcatcataatcatcaccATAGCCATCATCATCCACCAACATGTATAGTTAAAGAGGAACCAAAAGCATTAAATGAATATGATTCAATTAATTTGACACATTCAACAGCGAATACAAATAGTGGACAATTAATATCACCGATTAATGcatcgaataaaaaatttcttcatcaaaatgaaattttgaatttgaaatatgaacCAGGTACAACAAATTTTCTTGATAATTCATCATCTGGAATTGGTTCTAGTACTGGTGGCGGTGGCAATGGTGGTGGTGGTAATAGTGGTGTTAATTCGCCATTATTAGCTAGATCAAAACTACAAACAACTTTATTACCTGCAAATCCAAGTCCTGATTCTGCTATTCATTCCGTATATACGCATAGTTCACCTAGCCAATCACCATTAACTTCACGTCATGCACCTTATACACCATCATTGAGTCGTAATAATAGTGATGCATCGCATAGTAGTTGTTATTCATACAGTTCTGAATTTAGTCCAACACATTCACCTATCCAAGGTCGTCATAATATTTATGGTGGCAATGGTACAACATCATCTGTTGCAGCTGCAGCAGCTGCAGCTGTTAATTCAAATAATGGTCAACAATTTATTCATTCCATTTTATATAGGccaattcatgaaaatttagaCAATAATGGTCAAcatcagcaacaacaacagcagccaattttattaaaaaaagagcaATTGGGTATTGTTACATCACAAATGAATTCAGTGaattcgaataatttaaatgtaacacCTACAAATAATGTagattcaaaagattttttaattgataatgaaTCAGGTATTCCATCACCTGGTATCTCAAGACAACAACTTATTAATAGTCCATGTCCAATATGTGGTGATAAAATATCTGGTTTTCATTATGGTATATTTTCTTGTGAATCATGCAAAGGATTCTTTAAGAGAACTGTACAAAATCGTAAGAATTATGTTTGTGTTCGTGGCGGACCGTGTCCAGTTACAATTTCAACACGCAAAAAATGTCCTGCTTGTCGTTTTGATAAATGTCTCAATAAGGGTATGAAATTAGAAGCGATACGTGAAGATCGTACAAGAGGTGGTAGATCAACTTATCAATGTTCATATACATTACCAAATCCATtaattttatcagaaaataCAGCAGCAAATTTATTACAAGCAAATGCTAGAATCAATGGTTGTATTATAAATTCAGAAGCAAGTTCTGATTCAAATAGTATTGGTGGATCATCGCAAAGTTCACAAAGAAGTAATACAGTTCCACAATTGTTACAAGAAATAATGGATGTTGAACATCTATGGCAATATAGTGAAACTGAATTAGCACGTTTAAATCAACCGATTAATTCTGCAACTGGATCATCTTCAATGGATAGAAATACACCATCAACTTCAGATGAAACAAATAATTCTACAGCAAATAATATAACATCAAATCCTTTATTAGCTAGTACTGGTTTATCATCGAATGGTGAAAATACAAATCCTGATTTAATAGCTACTTTGTGCAATGTTGCTGATCTTCGTCttctaaaaattgttaaatggtGTAAAAGTTTaccacttttcaaaaatatatcgatcgATGATCAAATATGTCTTCTGATAAACTCATGGTgtgaattgttattattttcatgttgTTTTAGATCTTTATCATCACCTGGTGAAATAAAGATTTCCCTAGGTAAAACTATTACATTGACACAAGCTAAAACCAGTGGTTTACaggcTTGTATTGAAAGAATGTTAAATTTAACCGAACATTTAAGACGATTACGAGTTGATCGTTATGAATATGTTGCCATGAAAGTTATTGTACTTTTACAATCAGacACAACTGAATTACAAGAACCAGTTAAAGTTAGAGAAAATCAAGAGAAAGCCTTACAAGCCTTACAAGCGTATACATTATCACATTATCCTGATAATCGATCAAAATTTGGTGAATTATTATTGCGAATTCCAGAATTACAAAGGACATGTCAGCTCGTTAAAGAAATGCTTCTTATTAAATCAAAAGATGGTgaagattttaatttacttatggAATTGCTACGTGGAGAACATTAA
Protein Sequence
MLTNDGDLSPQQTTTSSSSLSSLGSINATAVINGPNSTNINNLSHQQQHQQQQITSVPHSAIIRNNISVTNIKCEDNLIPNGLLNNSIQQQQQQSSSTITPIQTTVNNYYNGIPQSTTTAPSGISGSGSIRIAVPKVEESDDESESELSNIENLKVSRRSNNNKNNGPRPMSWEGELSENENELMETDQNQHHHNHHKNNNSSNNNNNNNNNNDNLHHHHNHHHSHHHPPTCIVKEEPKALNEYDSINLTHSTANTNSGQLISPINASNKKFLHQNEILNLKYEPGTTNFLDNSSSGIGSSTGGGGNGGGGNSGVNSPLLARSKLQTTLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHNIYGGNGTTSSVAAAAAAAVNSNNGQQFIHSILYRPIHENLDNNGQHQQQQQQPILLKKEQLGIVTSQMNSVNSNNLNVTPTNNVDSKDFLIDNESGIPSPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVTISTRKKCPACRFDKCLNKGMKLEAIREDRTRGGRSTYQCSYTLPNPLILSENTAANLLQANARINGCIINSEASSDSNSIGGSSQSSQRSNTVPQLLQEIMDVEHLWQYSETELARLNQPINSATGSSSMDRNTPSTSDETNNSTANNITSNPLLASTGLSSNGENTNPDLIATLCNVADLRLLKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSLSSPGEIKISLGKTITLTQAKTSGLQACIERMLNLTEHLRRLRVDRYEYVAMKVIVLLQSDTTELQEPVKVRENQEKALQALQAYTLSHYPDNRSKFGELLLRIPELQRTCQLVKEMLLIKSKDGEDFNLLMELLRGEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01224670;
90% Identity
iTF_00363327;
80% Identity
iTF_00363327;