Clon002583.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Condylostylus longicornis
Gene Symbol
Lrrfip2
Assembly
GCA_029603195.2
Location
JAQSLO010000010.1:402597-413751[+]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 2 2.9e+04 -6.5 10.3 191 272 88 174 5 193 0.67
2 4 1.1 1.6e+04 -4.5 1.1 268 292 347 371 333 377 0.53
3 4 5.5e-109 8e-105 351.1 30.5 1 299 436 735 436 736 0.92
4 4 0.05 7.3e+02 -0.1 11.2 1 87 761 861 758 873 0.64

Sequence Information

Coding Sequence
atgtcaagtgaacaaaacaataacaataataataattcaatagaaATACCAAATGTCAAAGAAAATGTTGAGACAaaagatattttgaaagaaaattatgataataatgaaaataacactaatgataataatgtaACTGATCTCTTAACACCAGAATGTGAAAAAGATGAAGGTGAATTTGATTTTAGTGATAATGATTTAATTGAATCAGatactgaaaataattatgatgataatgataataaagagAGAACTGAGGATGatcaaaatttaacagaaactaaaaatcataatgatttaataacaacaatttcaaatgttgaaacatttaatttaaatgttaaaaataataatgattccATATGTACAAGTATTGAAGatttagtaaaagaaaataatgatcaTTTAGATAATATTAGATcagaatctaaaaataatttaaatgaattaaaacataatggtaatgaaaatgtaaataattcaataatgaaTTCAACAAATAATGATGACGAATGTCATCatttaatgaatgaaaacttttccattcaaaataataatataaatagtaagAATATTGACAAtagtacaaataataataaaaatgataataacgacaataatgatgattatgatgataatataaatttgaaaaagccactcaatttaaattttgaaaatataaataataatatgaatgattatgataataatgatcAATTATCAATTACACCAAGTACAGCTGCTGATATTCTTGCCTCACCACcaccatttattattaaaaaatcatcatcttgtacaacaacaacaattaatgaaaataattcaaataatttatcattatcaacatccttaacaaatttaaattcaaataataatgataataataataaattaatggaaCCATTTTGTCCAATACCAACAACACCAAGAAAATTTGTTGATTcaattgataatgataatgatgaaaatgataatgaaCAAAGATTTTTTCCACCAAAAAAatgtaatagtaatagtaaaataaaaattaatttaaaagaaaataatgaaattaatattaatagtaataatgataatagcaaaaataataatgataataaaaataaattaaaagattttgacGATACTAATTATAATAACGAAGATGATGAAGTATTTTATAGTGGTGATGAAaatgattataatgataatgaaaataatgatgataataataatgatgacaataattatgatgatgatgatgatgattttgattctgatgatgataaaattataattgatttctTAGGAAAAGCAAATCCATTTgctGAAGCAAGACTGGCGGCTAGGCGCCAGGCTCGTGCTGAAGCACGAGAAATACGAATGCGTGAATTGGAAAGGCAACAAAAAGAAATGGATCAAAATGCTGATCGGGCTTATGATATGCAAACATCATCTGGTATTGATCCATTGGCAAGATCTCGTTTAACAGTTGTTGGTAATCATATTGGTAATTCAATTGGTAATAATACATCACATTTAAGAGCAACAAGTAGCGGTGGTTCAATGTCATCAAGACGTAGTAGTGAAGATTCATTAGAAGAGGAAGGCAGAAGTATACGTGATATTAGACATGAATTGaaggATCTTGAAGAACGCTTCCGAAAAGCAATGATAGCAAATGCTCAGCTAGATAATGAAAGAACATCACATACGTATCAAATTGAATTACTTAAAGATCAATTAGAGGAGAAAGGTGAAAAATATGCACAGCTACAACgtgaatataaagagaaatcaCGTGAAACTAATGCACTTAAACGTAATGTTGATAAATTAGAAGAAGAATTACGATTAGTTAAAGGTCAATTAGATGAACGTGATAGTTTAATTAGTGAACAAGGTTTAGTTATTGTATTGATTGAAAATGATGATGGAACAGATGCTAAACGTGCTCTAGTCAGTGTTCAAAATGCACAACTTTTAGGTTCTGTACAAGGTTCTTtagatgttCGACTTAAGAAATTTACCGAAGAAAAACAACTTTTACAAAAAGAAGTTCAAACATTACAACAGCAAGTAGATGAATTAAAATCACAAGGTAGAGGAAAAAGTTCAATGAATGGTCCATTAGGTATTGATGATGAATATGAAGCGCAAAgagaagcaaataaattaatatctgaatataaatataaattacaaaaagctGAACAAGAAATTGCTAGTCTACAAGCCAGTTTAGCTAGATCAGAAACCCAAGTAATAAGATATAAGAGTACTGCTGAAGCAGCTGAAAAAGCTGAagcagaattaaaaattgaaagaagaaaattacaaaGAGAGaatcgtGAAACAATGGAGCGTCTAGAGGAGCTAGAAACATCAAATAATCATTTATTGAAAAGATTAGATAAACTGAAAACAGCAAAAAcaacaacaacaacaacaacatcagcaGCAGCTActtcaaataatattagtttttctaaaacaaatacaaaagcGGCTTCAACAATACCATTATCAGATTCATCATCACCATCTAAAATGGAATCTAATAGTtcgtcattattattaaatagaaattctatTATGAAAGAAGAAGATACTACTACTGACGATTCTGTATCATCTAATAATCCTTCTTCATcttcaagaaaacaaaatataacaaaaaatatttcaaatgcaaCTAAAACTATGActaattctaattctaataaataa
Protein Sequence
MSSEQNNNNNNNSIEIPNVKENVETKDILKENYDNNENNTNDNNVTDLLTPECEKDEGEFDFSDNDLIESDTENNYDDNDNKERTEDDQNLTETKNHNDLITTISNVETFNLNVKNNNDSICTSIEDLVKENNDHLDNIRSESKNNLNELKHNGNENVNNSIMNSTNNDDECHHLMNENFSIQNNNINSKNIDNSTNNNKNDNNDNNDDYDDNINLKKPLNLNFENINNNMNDYDNNDQLSITPSTAADILASPPPFIIKKSSSCTTTTINENNSNNLSLSTSLTNLNSNNNDNNNKLMEPFCPIPTTPRKFVDSIDNDNDENDNEQRFFPPKKCNSNSKIKINLKENNEININSNNDNSKNNNDNKNKLKDFDDTNYNNEDDEVFYSGDENDYNDNENNDDNNNDDNNYDDDDDDFDSDDDKIIIDFLGKANPFAEARLAARRQARAEAREIRMRELERQQKEMDQNADRAYDMQTSSGIDPLARSRLTVVGNHIGNSIGNNTSHLRATSSGGSMSSRRSSEDSLEEEGRSIRDIRHELKDLEERFRKAMIANAQLDNERTSHTYQIELLKDQLEEKGEKYAQLQREYKEKSRETNALKRNVDKLEEELRLVKGQLDERDSLISEQGLVIVLIENDDGTDAKRALVSVQNAQLLGSVQGSLDVRLKKFTEEKQLLQKEVQTLQQQVDELKSQGRGKSSMNGPLGIDDEYEAQREANKLISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENRETMERLEELETSNNHLLKRLDKLKTAKTTTTTTTSAAATSNNISFSKTNTKAASTIPLSDSSSPSKMESNSSSLLLNRNSIMKEEDTTTDDSVSSNNPSSSSRKQNITKNISNATKTMTNSNSNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-