Ccol012160.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000004.1:7574936-7584942[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.32 24 5.5 0.1 2 23 122 144 121 144 0.91 2 30 2.6 2e+02 2.7 1.5 5 23 154 173 150 173 0.85 3 30 0.00098 0.075 13.4 0.4 3 23 364 385 362 385 0.95 4 30 0.51 39 4.9 0.2 2 20 392 410 391 412 0.91 5 30 4.1 3.2e+02 2.0 4.1 1 23 424 446 424 446 0.97 6 30 0.0059 0.45 11.0 2.0 1 23 569 592 569 592 0.92 7 30 2.6e-05 0.002 18.4 0.8 1 23 610 633 610 633 0.94 8 30 3e-05 0.0023 18.2 0.5 1 23 650 673 650 673 0.94 9 30 1.4 1.1e+02 3.5 2.8 1 19 703 721 703 726 0.90 10 30 4.4 3.4e+02 1.9 0.6 3 23 766 787 764 787 0.89 11 30 0.03 2.3 8.8 0.3 2 23 794 815 793 815 0.96 12 30 0.00017 0.013 15.8 0.5 1 23 823 845 823 845 0.97 13 30 0.14 10 6.7 0.1 3 23 917 939 917 939 0.93 14 30 0.0029 0.22 11.9 0.7 1 23 942 965 942 965 0.97 15 30 0.0016 0.13 12.7 0.3 2 23 972 994 971 994 0.96 16 30 0.035 2.7 8.5 0.6 2 22 1021 1041 1020 1041 0.93 17 30 0.17 13 6.4 0.1 2 20 1056 1074 1055 1076 0.91 18 30 0.019 1.4 9.4 2.2 2 22 1091 1111 1090 1111 0.93 19 30 0.0095 0.73 10.3 0.2 2 23 1129 1151 1128 1151 0.91 20 30 0.036 2.7 8.5 1.0 3 23 1189 1211 1188 1211 0.92 21 30 3.4 2.6e+02 2.3 1.9 2 23 1219 1241 1219 1241 0.92 22 30 0.0015 0.11 12.9 0.1 2 23 1309 1330 1308 1330 0.96 23 30 1.5 1.2e+02 3.4 1.0 1 23 1345 1368 1345 1368 0.94 24 30 2.3 1.7e+02 2.9 2.8 1 23 1374 1397 1374 1397 0.82 25 30 0.08 6.1 7.4 0.9 2 23 1403 1424 1402 1424 0.97 26 30 0.65 50 4.5 0.3 2 23 1434 1456 1433 1456 0.94 27 30 2.4 1.8e+02 2.8 1.2 1 23 1494 1517 1494 1517 0.95 28 30 1.2 91 3.7 0.0 3 23 1547 1568 1546 1568 0.94 29 30 0.04 3 8.4 1.3 2 23 1577 1599 1576 1599 0.96 30 30 2.8 2.2e+02 2.6 2.6 3 19 1606 1622 1603 1626 0.85
Sequence Information
- Coding Sequence
- ATGGGAGAAAGCTTGGAAGAGCTTTGCCGTTTATGTGCGGCCTTTGATCCGGTAAAAATGCCGATATTCAGCTCGGAAGGGAAACAGAGGAATTTGATCGTCAAAATACAAACTTGCCTACGATTCAAGGTTGCTGAAGAAGATGGGTTTCCCAGTAGCGTTTGTTATCGATGCATGTTCAATCTGGAAAATTATTATGATTTCTATGAAACTTGCATTCGAGCACAAACTCTTCTTCAAAGCAAAATCGGTGAAGGAGGAGAGACGAGTGCAGTCACTGTTACACCTGTTATTAAAGAAGAAGGCGGTGGAGGAGCAGGGGCAGGAGGAGGTGGTGGAATACCAAACGCGGAAAGACCGATTCCTTGCGATCTCTGTCCATCTTCATTTACTTCGGCTAAGGACAGGTGGACGCACGTGTCACAGAACCACAAAGGTGATCCGAGAATCACGTGTATATTTTGCAGAAAGGGCTTCAGCACGGTTTCCAATTTGAACTTCCACAAAAACAATAAACATCCAGAGGAAATGGAAGAGTTGGAAAGAAAGCTGAAACCGCTTCCAAAACTACAGAAGATCAACGACATCCCAAAAATCCAAAACAAAACTTATGAAACAGTACGAAATTTTTTAAACAATAAGACTGAAAACATTTTGCAAGATGCGAGGCATTCGGATCTAGCTAATTTTAACGTGAAAATCGGTAACACGGATATTAAATTCGGTAACACGAGCATCACAGTGGGTAACACGGACATACGAGTCGGGAGTAGCGGAGGTTCTGGAGGAAGCATCAGTGAGAACAAGGCGAACGAGAACAAGTCGATGATCGATCGATTGAAAAATCTCGGCGTGGAAGTGTTCACGGGAAACTCGAAGAGCAGCAATGACTACAATTCGGAAAGCGCATCTGGAAACGAGGATACTGACCACAATAGACGTAGATTCGCAAAAGCTCAGAAGATGTATACCTCGAGCGACGAACAAAACTCGGAATTTCAAAATCCGGAAGATTTGTTAGAATTAGATTTAGAACTGGAAGGAGGAGACAACATCGAGAACGTGATGGAATCGGAATCGATATTCGGATGCGAGGTTTGTTTTCGCGACTTCAAGGACAGGTCCTCGCTGTGGTTGCACATGCTGTACTCTCACAAGGTGGAAGCCGGTTGCACCTGCGGGATCTGTTTGAAACTGTTCTCGAGCTACCAGGAACTACTGGAACATGCAATCGTTTGCAAGGATCAAATGGAGAGCGAAAAGAGGAGATATTACTGTAAGATTTGCTATAGGCAGCACGATTCAAAGAAGAAGTTAGAATCGCACACCTCCATTCATAATTTAAATGACGACTACATTAGAGAAAATTTCGATGTAAATAATTTGATTGCCTCAAACCCAACCATGACTGAAAAAATGAAATACGAAGATTACATGGAGGCGGATGTGAGCGAGTATTCAGACACGTATTCGCAAGAGCTCGACATAACGAACGACTCGACACAGAACAGCCTCACTGGAAACGGGTATCCGAATGCCGGACAACAAAATTACTATGACGAAGTACAAAATTATAGAGATCAATTAGCTTATCAAAATTTTCTAGAGGGTTCTGGGCATTTTCTAGAATCCTCGTCATTTTTCGATAACGTCAAAACGGACGAAAACAAATCGGAAATGAATCAAGGCGAAGACATGAACAAATTCCGTTGCGACGAATGCTATAGGACTTACGAGACTTCATTGCAGTTGACCAAACACAAGTATAACGTTCACAAAAATCCAAATCGGTTGCAATACCGAAACGATTCCTTCGGGAATCCAGTGTACGAATGCGAATATTGCGGACAGACGTACGAATCGCCCAAACAGTTGACGAAACACCGTTACAACGTTCACAAGTTTCCGACGAACGCGGTCATGATGGACGATTCGGGGAAATCGATGTACAGTTGCTCGGAATGTCCGAGAGCTTTCGAAACACCAAGACAATTGCAGAAACACAGATATAATGTTCACAAGGCGCCGAGAAAGATTCCCGGACAGCCGGGCTGCGATAGTCCGAGCAGCGTGGAATCTTTCAAGCCGGGTTTCCACTATTCGTCATTCGACTGCGAGATATGCGGGGAAAAGTCGACGAGCAAGACGGAGCGTTGGAAACACTGTTACAAACAACATCAGAACGAAGAGAAATTAGTGTGTTCGAACGAAGACTGCAGAAAAATAATGCCGACTGAAAATTTTCAGAGAGAACACATGAATTTCCACGCGATGCAGGGAAAGTATCCGATATGCTGCGAAATATGTTCGAAGCTGTGGACGACTAAGATGGAATTTTGGAAGCACGTGTCTGGCGTTCATTACTCTCTCATCGGATTGACTTGCGGGGTTTGCATGAAGATGTTCTTGACTCTGGACGAATTGAAGGAGCACATAAAAACTCACGAGCCTCTCTCGGAGGCGGAATTCAATTGCGACATTTGCGGTCGTGGGTACTCTTCAAAACCAAAAATGACACGTCATAGACTGATACACGAAAACGATCCGGAAAGCGACGAGTACAATATATTGAAGCATACACTGCTGAAAGGAAACAAGCCTCCTCCTCCGGAAAAGGGAAAATACGAAATATTAAATATCCCAAAGATAAATCGAAATTTCGAGAATGATTTGGAAATAATAGAAGTCAATCCCGATGACAACGGACTAGTCGACTTGGAGCACGAAGAGAATCCGGATACGTTGTGGTGCGACGTTTGTCCCGATCTTACCTTTGCCGATTTAGATGAATTGCGTTCTCACCGACGTAACATTCATGCCTTATATCCGTGCGACTTGTGTCCGAAATTCTACGGCGGTGTTAGTCACTTATGGAAGCACACCAACCGTAGTCACAAAAATCATCCGGAAATAACTTGCGAGTTCTGCGGAAAGACGAGTGCGAGTCGCATTCAACTCCGAGGCCACATAAATAAGAATCACAAGGAAATACTTTTGGGACACGTCGTGTCTGAAGGTGGAAACCCGCACGTTTTACCGGATCCAGATCCGACGAATCTGAATTGCAGGAGATGCGGTCGGGAATTCCGAATTCGGTCACTCGTTCGCCGTCACGAGCGAACGTGTCTAACAAAAACGAATTTCGATCCGGATCCGACGAATCTGAACTGTCAGAAATGTGGAAAGTATTACCCGATACGTTCCTTGGTGAGAAGACACGAGAAAGCCTGCCTGAACAGAATAATAAAAGATGTGGATCCGGCTAATTTGAATTGTAAGGTTTGCGGTAAAGAATTCCCGAAGAGATCATACTGTCGTCGTCACGAAAGAACTTGCGGAACAAAGAAGGAAAGAGCACCGAAGGAAGAAGGGCCCGTCGAAATTCAATGCGAGTGGTGTCCGAAACAGTTCAACAATCGACGAGCCTACGCCAGTCACGTGGATTACATGCACAGCTTAGTGACCTGCGACGTATGCGAACCGGATGAGAAGGCTCAGTTCAGATCGAAAACTGATCTGTACAATCACTGCAAAGAAAAACACAGCGATCATCCAGATCTGTTGTGCACGTCTGAGAAATGTAGACGGCTCTTGAGAACCAAAGCGGATTTGGAAAAGCACATGAGAGATCACAAAAACAGAGACAATCCTCCGACATGTGAATTTTGCGCAGACATATTTAAAGGACGTAAGAAATTGAGGATTCACATGCTCCACCAACACAGATCGGAAGAATCTCGAAGGTACATCTGTGGCGTTTGCGTAAAAGTCCACGACGACACGGAGAAACTGATAGCCCACGCTTACGAAATGCACAGCAAGATCATGGAACGTGACTTCACTTGTAAAATCTGTGCCAAGCAATACAACTGTAACGCGAAGGTGTTGGATCATCACAAAAACACTCACGACAGCCGGTACAAGCCGTGCAAAGTCTGTCTGAGAATCTTCACGGATCCGGCTTTGCTGGAGGAACACCTGAAACAGCACGCGGTGGGCGATCGGAGCATAAACGCGGATCTGGTCACCGATCACCAGTGCATGATCTGCATGGAGTCGTTCGATAGCGTCGTGCTGTTGCACGAACACGTCAAGGAAAATCATCCGAATCTTCGGGATTATTCGTGCTTGATCTGCGGTAAAAAGTACCAAAGCATTTACACATGCTACGATCACATGGAAAACAAGCACGGTGGCACTTATCTGACTTGTCGGAAATGCCTAATGTTGTTCACAGATAAGGAGGAGAAGGCGAATCACATGATGACGCATGGAATCCAAGAGGAATTAGATTCATTGACGTGCACTCTTTGTCGCACTCGAAACACGTCGGAGGAAGCTTTAGAAACTCACATCAGGGAATCTCATTCTGACCTCTTCGAAGAACTAGCTGATAGAAACATGTGTTTGATTTGTTCCAAAGTATTAAAATACAAATATAGCATATTCTGTCACGTAGAAAAAAATCATCCCAATAATTATTGCTGTAGAGTGTGCTTAATGATATATAAAGAAAAGGACAAATTAGACGATCATGTTTTGAGACTACACACCCGGGATAAGGAAGGTAATCCTCCAGTGTTCGTGCCGAAGCAAATTAACAAAAAGCCAGTGAGTAATAAGCGACCGAAAAACATGTGCGCCGTTTGCCAGAAAATCGAACCGAATGCGGAGGCCCTCCGGAAACACGTGGAAACCGAGCACGAGTACGTACTTTCGAAAGAATTGACTTGTAGTCTTTGCGGACACACGTACGCGAATCGGTTCAAAGTGGCCACACACGTGAAGATGTATCATGGACCGCCGTACATGTGCTGCCGGGTATGTAGCAAGATATACGACAACGAGGACGAGTTCATGAATCACTGTGCCGAGCACGAGAGCGAAGTAGTCCCGAAACCAGAGAAGGAGCCAATGGGAAGGAGAAAGAGAAAGCGAGTCGAGGTGGAGACGCCCTCGAAACGACCTCGAAGTTCGAGAACGCGTATTGTTAATAATGTAAATAAATATGAAGCGGAAGAAGTGGAGACACTCGAGGAGGACGAGGAAGAAGAAGACGAAGAAGAGGAGGAGATGGAAGAGGATGAAAATGAAACTTCCGTAGATTATCAGGGAGATGTGAAAGAGGAGATGGACGAGGAAATGGAATCTGAGATGGAATACGAGAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGCGAAACGGTTAAGAACAACACCGGGAACGAAGAGTTCAAGATAAAAATCAAACACAGTATTGGAGCCAAAGAAGAGGACGACGAGGGGAAAAGCGGAAAAGGTTTGAAGGGACTACAGAGAAGCGAGGTCGTTCGAAACGGAGAAGGAAGCGAAGGTTCGAAAGGTTCAGGAGAGGAGAAGATGAGCTCTCTTATGGGAGACATGAAGAGTTTAACATCTTGCGGAGCCGAATAG
- Protein Sequence
- MGESLEELCRLCAAFDPVKMPIFSSEGKQRNLIVKIQTCLRFKVAEEDGFPSSVCYRCMFNLENYYDFYETCIRAQTLLQSKIGEGGETSAVTVTPVIKEEGGGGAGAGGGGGIPNAERPIPCDLCPSSFTSAKDRWTHVSQNHKGDPRITCIFCRKGFSTVSNLNFHKNNKHPEEMEELERKLKPLPKLQKINDIPKIQNKTYETVRNFLNNKTENILQDARHSDLANFNVKIGNTDIKFGNTSITVGNTDIRVGSSGGSGGSISENKANENKSMIDRLKNLGVEVFTGNSKSSNDYNSESASGNEDTDHNRRRFAKAQKMYTSSDEQNSEFQNPEDLLELDLELEGGDNIENVMESESIFGCEVCFRDFKDRSSLWLHMLYSHKVEAGCTCGICLKLFSSYQELLEHAIVCKDQMESEKRRYYCKICYRQHDSKKKLESHTSIHNLNDDYIRENFDVNNLIASNPTMTEKMKYEDYMEADVSEYSDTYSQELDITNDSTQNSLTGNGYPNAGQQNYYDEVQNYRDQLAYQNFLEGSGHFLESSSFFDNVKTDENKSEMNQGEDMNKFRCDECYRTYETSLQLTKHKYNVHKNPNRLQYRNDSFGNPVYECEYCGQTYESPKQLTKHRYNVHKFPTNAVMMDDSGKSMYSCSECPRAFETPRQLQKHRYNVHKAPRKIPGQPGCDSPSSVESFKPGFHYSSFDCEICGEKSTSKTERWKHCYKQHQNEEKLVCSNEDCRKIMPTENFQREHMNFHAMQGKYPICCEICSKLWTTKMEFWKHVSGVHYSLIGLTCGVCMKMFLTLDELKEHIKTHEPLSEAEFNCDICGRGYSSKPKMTRHRLIHENDPESDEYNILKHTLLKGNKPPPPEKGKYEILNIPKINRNFENDLEIIEVNPDDNGLVDLEHEENPDTLWCDVCPDLTFADLDELRSHRRNIHALYPCDLCPKFYGGVSHLWKHTNRSHKNHPEITCEFCGKTSASRIQLRGHINKNHKEILLGHVVSEGGNPHVLPDPDPTNLNCRRCGREFRIRSLVRRHERTCLTKTNFDPDPTNLNCQKCGKYYPIRSLVRRHEKACLNRIIKDVDPANLNCKVCGKEFPKRSYCRRHERTCGTKKERAPKEEGPVEIQCEWCPKQFNNRRAYASHVDYMHSLVTCDVCEPDEKAQFRSKTDLYNHCKEKHSDHPDLLCTSEKCRRLLRTKADLEKHMRDHKNRDNPPTCEFCADIFKGRKKLRIHMLHQHRSEESRRYICGVCVKVHDDTEKLIAHAYEMHSKIMERDFTCKICAKQYNCNAKVLDHHKNTHDSRYKPCKVCLRIFTDPALLEEHLKQHAVGDRSINADLVTDHQCMICMESFDSVVLLHEHVKENHPNLRDYSCLICGKKYQSIYTCYDHMENKHGGTYLTCRKCLMLFTDKEEKANHMMTHGIQEELDSLTCTLCRTRNTSEEALETHIRESHSDLFEELADRNMCLICSKVLKYKYSIFCHVEKNHPNNYCCRVCLMIYKEKDKLDDHVLRLHTRDKEGNPPVFVPKQINKKPVSNKRPKNMCAVCQKIEPNAEALRKHVETEHEYVLSKELTCSLCGHTYANRFKVATHVKMYHGPPYMCCRVCSKIYDNEDEFMNHCAEHESEVVPKPEKEPMGRRKRKRVEVETPSKRPRSSRTRIVNNVNKYEAEEVETLEEDEEEEDEEEEEMEEDENETSVDYQGDVKEEMDEEMESEMEYENXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCETVKNNTGNEEFKIKIKHSIGAKEEDDEGKSGKGLKGLQRSEVVRNGEGSEGSKGSGEEKMSSLMGDMKSLTSCGAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01165107;
- 90% Identity
- -
- 80% Identity
- -