Basic Information

Insect: Columbicola columbae
Gene Symbol: -
Assembly: GCA_016920875.1
Location: JADMLL010000001.1:11849831-11862778[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0045 0.35 11.3 2.8 1 23 396 418 396 418 0.98

2 20 1.5e-07 1.1e-05 25.5 3.3 1 23 424 446 424 446 0.98

3 20 1.1e-07 8.8e-06 25.8 1.9 1 23 452 474 452 474 0.98

4 20 6e-05 0.0046 17.3 6.7 1 23 480 502 480 502 0.97

5 20 6.8e-06 0.00052 20.2 5.6 1 23 508 530 508 530 0.97

6 20 1.5e-05 0.0012 19.1 6.0 1 23 536 558 536 558 0.98

7 20 6.6e-08 5.1e-06 26.6 3.1 1 23 564 586 564 586 0.98

8 20 3e-07 2.3e-05 24.5 4.1 1 23 592 614 592 614 0.98

9 20 1.4e-07 1.1e-05 25.6 4.2 1 23 620 642 620 642 0.98

10 20 9.2e-07 7.1e-05 23.0 7.8 1 23 648 670 648 670 0.98

11 20 5.4e-07 4.2e-05 23.7 4.0 1 23 676 698 676 698 0.98

12 20 0.0019 0.15 12.5 8.0 1 23 704 726 704 726 0.98

13 20 6.3e-06 0.00048 20.3 5.8 1 23 732 754 732 754 0.98

14 20 7.4e-06 0.00056 20.1 7.8 1 23 760 782 760 782 0.98

15 20 6.5e-05 0.005 17.1 8.1 1 23 788 810 788 810 0.98

16 20 1.1e-05 0.00086 19.5 7.5 1 23 816 838 816 838 0.98

17 20 0.00086 0.066 13.6 8.8 1 21 844 864 844 866 0.94

18 20 2.4e-05 0.0019 18.5 0.5 1 23 872 894 872 894 0.98

19 20 0.0052 0.4 11.2 3.9 1 23 904 926 904 926 0.98

20 20 1e-07 8e-06 25.9 1.0 1 23 932 954 932 954 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0045	0.35	11.3	2.8	1	23	396	418	396	418	0.98
2	20	1.5e-07	1.1e-05	25.5	3.3	1	23	424	446	424	446	0.98
3	20	1.1e-07	8.8e-06	25.8	1.9	1	23	452	474	452	474	0.98
4	20	6e-05	0.0046	17.3	6.7	1	23	480	502	480	502	0.97
5	20	6.8e-06	0.00052	20.2	5.6	1	23	508	530	508	530	0.97
6	20	1.5e-05	0.0012	19.1	6.0	1	23	536	558	536	558	0.98
7	20	6.6e-08	5.1e-06	26.6	3.1	1	23	564	586	564	586	0.98
8	20	3e-07	2.3e-05	24.5	4.1	1	23	592	614	592	614	0.98
9	20	1.4e-07	1.1e-05	25.6	4.2	1	23	620	642	620	642	0.98
10	20	9.2e-07	7.1e-05	23.0	7.8	1	23	648	670	648	670	0.98
11	20	5.4e-07	4.2e-05	23.7	4.0	1	23	676	698	676	698	0.98
12	20	0.0019	0.15	12.5	8.0	1	23	704	726	704	726	0.98
13	20	6.3e-06	0.00048	20.3	5.8	1	23	732	754	732	754	0.98
14	20	7.4e-06	0.00056	20.1	7.8	1	23	760	782	760	782	0.98
15	20	6.5e-05	0.005	17.1	8.1	1	23	788	810	788	810	0.98
16	20	1.1e-05	0.00086	19.5	7.5	1	23	816	838	816	838	0.98
17	20	0.00086	0.066	13.6	8.8	1	21	844	864	844	866	0.94
18	20	2.4e-05	0.0019	18.5	0.5	1	23	872	894	872	894	0.98
19	20	0.0052	0.4	11.2	3.9	1	23	904	926	904	926	0.98
20	20	1e-07	8e-06	25.9	1.0	1	23	932	954	932	954	0.97

Sequence Information

Coding Sequence: ATGAACAGCGAGCAAGCCACGGCCATGTCAGTATCGGTCTCAAGTGCCTCCGCTTGTTCAGGAACTGAGGAAAATAATATAGTTTTACAAAGGCCGTCTGGATCTGCTGCTGCTGCGGCGGCTGCAGCTGCTGCCGATCTCCGTGTTGGTACTGTAGCTTTATCTAATGTAGCAAAGTATTGGGTGTTGTCAAATCTCTTCCCGGGTCCAATACCTCAACCGGTGTATCTTAATCATCCTCCAGATCGAATGGGGGATATTAAACAAGAGTTAGATCTTAGTCAACAAGTTGTTCCAACCTCCATGGAAGGCATGACATTGCTTCACCAATCTACTCATTCCCAAGCACAGGGCCAGCAGCCTAGTCAGCCAGAAAAGGAAACAAAATCGGAGAGAAGAACTTGTGTCACTGAGAGAGTCAGCGACGACCAGGTTCACTGCAGAGTTCCATGTGAGATACCTACCGTCAGTGGGGTTCAAATACCAGGAAATCAGCCAGGGCACCCCGTCAAATCAACAAAATCAGCAAATGTCTCAGTCTCAAGGTCAAAGTCAACAAGTTCAACAGCAAATTATCCATCAACAACCGCCGCCGCAGCCGCCACCGCAGCAGCAGCAGCCACCACAACAGCAACAACCTCCGCCGCCTCCGCCGGCACCTCAATCACACAATCACAGCACCAATCTCAATCTTCAAGCCAACAGTCGCAATCACAACAGGTCACTTCTCACCATTCAGTAGAAACAAATGCCAACAGCAGCAATCACATGGAGGAAAGTCTGAATTGTCAAGATATTAAATTAACCGGCCAGATGGTTACTACTCAAGAAATAAAAGATGAAAATAAGGAAATCGCTTGCAATATTAAAGATAATCGCCTTATTATGGCCAGTTTTCCAATGCAAGACGTTAAGGGTCACATGATGGATATTAGAACGGCGGACGGCGTCGTAAAATTAACAGCGGATCAGGACGTTGCTAAAACCTTGCTCAATGCTGATATGGTGCAAAGCATGTATAAGGTTAACGTTGAAGATATCAATCAGCTGCTGGCATATCACGAAGTTTTCGGTAAATTGTCGACTGATTCTTTAGTTCCCGTACAACAGAACGGCAGCAAAGTACAAGAGGGAAGTGGATCAGTACCCGCTGGAGGTCCGAGCAGTCCCAGCTCAGTTGGACCCTATTCTTGCGATATTTGCTGCAAAATATTTCCGTTTCGTTATCAGTTAATTGTCCACAGACGATATCACACCGAAAGGAAGCCGTTTACTTGTCAGGTGTGTGGAAAGAAGTATACACGCAAGGAGCATTTAGCAAATCATATGCGTTCTCATACGAATGATACTCCCTTCCGCTGCGAGATATGTGGTAAAGCGTTTACAAGGAAAGAACATTTTACAAATCACATAATGTGGCACACCGGAGAAACTCCGCATCGTTGCGACTTCTGCTCGAAGACTTTCACAAGAAAAGAGCATTTGTTAAATCATGTGAGACAACACACCGGGGAATCTCCTCACAGATGCGGGTATTGCAGCAAGTCGTTCACGAGAAAGGAGCACCTTATTAACCACGTGAGACAACACACGGGGGAGACCCCACACAAATGTCAATATTGTTCAAAAGAATTCGCCCGCAAAGATCACTTAACAAACCACGTTCGACAACATACAGGCGAAACTCCGTATCGATGTACTTATTGCCCTAAGGCATTTACTAGGAAAGATCATCTAAACGACCACATTCGACAACACACAGGGGAGACGCCTTATAAATGTCAGTACTGCCCTAAAGAATTTTCGAGAAAAGATCATTTAACCAATCATGTACGACAGCATACAGGAGAAACTCCGTTTAAGTGCCAGTATTGCCCGAAAGAATTTTCAAGAAAAGATCACCTCACGAACCATATTCGGCAACACACAGGCGAAACCCCCTTCAAATGCGATTACTGTCCGAAATGTTTTTCAAGGAAAGACCACCTGACGAATCATACAAGGCAGCACACCGGGGAAACTCCTTTTAAATGTCAATATTGTCCGAAATCTTTTGCAAGAAAAGATCATTTGAACGATCATACTCGTCAGCACACAGGGGAGACACCGTTCAAATGCGTTTACTGCTGCAAAGAATTCAGCAGGAAGGATCATTTGACGAATCATACTCGGCAACACACTGGCGAGCTGCCTTTCAAATGTGATTTTTGTCCTAAAGCATTCAGTAGAAAAGACCACTTAACTGAGCATACACGTCATCACACCGGTGAATCGCCCCACAAATGCCAGTATTGTACGAAGTCCTTTACTCGTAAAGAGCATTTGACAAATCATGTTCGACAACATACTGGTGAGTCGCCTCATCGGTGTCATTTCTGCGCGAAGACTTTCACCAGGAAGGAACATTTAAATAATCACGTGCGCATTCATACTGGTGATTCGCCCCATCGCTGCGAATTTTGTCAGAAGAGTTTTACTAGAAAAGAACATTTAACGAATCACTTGAGGCAACATTCAGGAGAGACTCCTCACTGTTGCAACGTTTGCAGCAAACCGTTTACTAGAAAGGAACATTTAATAAATCATATGCGATGTCACACGGGTGAGCGTCCTTTCGTCTGTAGCGACTGTGGAAAGAGTTTTCCTTTAAAAGGAAATCTTTTGTTTCATCAAAGATCTCACAATAAAGGAGCAGCCGCAGACAGACCTTTCCGGTGCGATTTATGCCCGAAGGATTTCACTTGTAAAGGACATTTAGTCTCGCATCGGAGAGCACATACCGGTGAGCGTCCACACTCTTGTCCCGATTGCGGTAAGACATTCGTGGAAAAAGGGAACCTCTTACGACACGTGAGAAAACACCAGGAGTCAGTCATTGGACATGTGCAGGGTAGCGGTGGCGGGGGAAGTGGAGTAATGCCTCCCCCTTCAGCGCCCCCTCCTCTACCTGTCTTGTCCAATTTAACAACGTATACAGCCCAGATACTCCATCCGACTGTTGTTGTTCCGACTCCTAACCCTGCCCTTACGTCTTACTGA
Protein Sequence: MNSEQATAMSVSVSSASACSGTEENNIVLQRPSGSAAAAAAAAAADLRVGTVALSNVAKYWVLSNLFPGPIPQPVYLNHPPDRMGDIKQELDLSQQVVPTSMEGMTLLHQSTHSQAQGQQPSQPEKETKSERRTCVTERVSDDQVHCRVPCEIPTVSGVQIPGNQPGHPVKSTKSANVSVSRSKSTSSTANYPSTTAAAAATAAAAATTTATTSAASAGTSITQSQHQSQSSSQQSQSQQVTSHHSVETNANSSNHMEESLNCQDIKLTGQMVTTQEIKDENKEIACNIKDNRLIMASFPMQDVKGHMMDIRTADGVVKLTADQDVAKTLLNADMVQSMYKVNVEDINQLLAYHEVFGKLSTDSLVPVQQNGSKVQEGSGSVPAGGPSSPSSVGPYSCDICCKIFPFRYQLIVHRRYHTERKPFTCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPHKCQYCSKEFARKDHLTNHVRQHTGETPYRCTYCPKAFTRKDHLNDHIRQHTGETPYKCQYCPKEFSRKDHLTNHVRQHTGETPFKCQYCPKEFSRKDHLTNHIRQHTGETPFKCDYCPKCFSRKDHLTNHTRQHTGETPFKCQYCPKSFARKDHLNDHTRQHTGETPFKCVYCCKEFSRKDHLTNHTRQHTGELPFKCDFCPKAFSRKDHLTEHTRHHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCAKTFTRKEHLNNHVRIHTGDSPHRCEFCQKSFTRKEHLTNHLRQHSGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFVCSDCGKSFPLKGNLLFHQRSHNKGAAADRPFRCDLCPKDFTCKGHLVSHRRAHTGERPHSCPDCGKTFVEKGNLLRHVRKHQESVIGHVQGSGGGGSGVMPPPSAPPPLPVLSNLTTYTAQILHPTVVVPTPNPALTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00362681;
90% Identity: iTF_00362681;
80% Identity: iTF_00362681;