Basic Information

Insect: Columbicola columbae
Gene Symbol: -
Assembly: GCA_016920875.1
Location: JADMLL010000001.1:11849831-11862778[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0014 1.4 9.0 2.5 14 38 421 446 413 449 0.82

2 17 0.005 5 7.1 3.2 6 35 442 471 441 480 0.77

3 17 0.036 35 4.4 3.5 6 33 466 497 464 503 0.72

4 17 0.016 16 5.6 4.8 5 38 497 530 493 532 0.76

5 17 0.00067 0.66 9.9 3.1 5 38 525 558 523 560 0.87

6 17 0.017 17 5.5 1.5 6 30 554 578 553 587 0.75

7 17 0.00018 0.17 11.8 1.2 11 38 587 614 577 616 0.83

8 17 7.7e-05 0.076 13.0 1.5 6 38 610 642 609 644 0.87

9 17 0.035 34 4.5 3.6 14 38 645 670 638 671 0.81

10 17 0.055 54 3.8 1.7 13 29 672 688 665 699 0.73

11 17 0.022 21 5.1 5.4 13 38 700 726 690 727 0.80

12 17 0.016 16 5.5 0.6 17 38 732 754 724 760 0.84

13 17 0.11 1.1e+02 2.8 7.6 17 38 760 782 750 789 0.86

14 17 0.11 1.1e+02 2.9 3.4 13 30 784 802 777 810 0.70

15 17 0.001 0.99 9.4 3.7 6 38 806 838 804 838 0.84

16 17 1.2 1.1e+03 -0.4 5.8 19 41 846 865 841 867 0.83

17 17 2.7 2.7e+03 -1.6 3.3 19 40 934 952 903 955 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0014	1.4	9.0	2.5	14	38	421	446	413	449	0.82
2	17	0.005	5	7.1	3.2	6	35	442	471	441	480	0.77
3	17	0.036	35	4.4	3.5	6	33	466	497	464	503	0.72
4	17	0.016	16	5.6	4.8	5	38	497	530	493	532	0.76
5	17	0.00067	0.66	9.9	3.1	5	38	525	558	523	560	0.87
6	17	0.017	17	5.5	1.5	6	30	554	578	553	587	0.75
7	17	0.00018	0.17	11.8	1.2	11	38	587	614	577	616	0.83
8	17	7.7e-05	0.076	13.0	1.5	6	38	610	642	609	644	0.87
9	17	0.035	34	4.5	3.6	14	38	645	670	638	671	0.81
10	17	0.055	54	3.8	1.7	13	29	672	688	665	699	0.73
11	17	0.022	21	5.1	5.4	13	38	700	726	690	727	0.80
12	17	0.016	16	5.5	0.6	17	38	732	754	724	760	0.84
13	17	0.11	1.1e+02	2.8	7.6	17	38	760	782	750	789	0.86
14	17	0.11	1.1e+02	2.9	3.4	13	30	784	802	777	810	0.70
15	17	0.001	0.99	9.4	3.7	6	38	806	838	804	838	0.84
16	17	1.2	1.1e+03	-0.4	5.8	19	41	846	865	841	867	0.83
17	17	2.7	2.7e+03	-1.6	3.3	19	40	934	952	903	955	0.82

Sequence Information

Coding Sequence: ATGAACAGCGAGCAAGCCACGGCCATGTCAGTATCGGTCTCAAGTGCCTCCGCTTGTTCAGGAACTGAGGAAAATAATATAGTTTTACAAAGGCCGTCTGGATCTGCTGCTGCTGCGGCGGCTGCAGCTGCTGCCGATCTCCGTGTTGGTACTGTAGCTTTATCTAATGTAGCAAAGTATTGGGTGTTGTCAAATCTCTTCCCGGGTCCAATACCTCAACCGGTGTATCTTAATCATCCTCCAGATCGAATGGGGGATATTAAACAAGAGTTAGATCTTAGTCAACAAGTTGTTCCAACCTCCATGGAAGGCATGACATTGCTTCACCAATCTACTCATTCCCAAGCACAGGGCCAGCAGCCTAGTCAGCCAGAAAAGGAAACAAAATCGGAGAGAAGAACTTGTGTCACTGAGAGAGTCAGCGACGACCAGGTTCACTGCAGAGTTCCATGTGAGATACCTACCGTCAGTGGGGTTCAAATACCAGGAAATCAGCCAGGGCACCCCGTCAAATCAACAAAATCAGCAAATGTCTCAGTCTCAAGGTCAAAGTCAACAAGTTCAACAGCAAATTATCCATCAACAACCGCCGCCGCAGCCGCCACCGCAGCAGCAGCAGCCACCACAACAGCAACAACCTCCGCCGCCTCCGCCGGCACCTCAATCACACAATCACAGCACCAATCTCAATCTTCAAGCCAACAGTCGCAATCACAACAGGTCACTTCTCACCATTCAGTAGAAACAAATGCCAACAGCAGCAATCACATGGAGGAAAGTCTGAATTGTCAAGATATTAAATTAACCGGCCAGATGGTTACTACTCAAGAAATAAAAGATGAAAATAAGGAAATCGCTTGCAATATTAAAGATAATCGCCTTATTATGGCCAGTTTTCCAATGCAAGACGTTAAGGGTCACATGATGGATATTAGAACGGCGGACGGCGTCGTAAAATTAACAGCGGATCAGGACGTTGCTAAAACCTTGCTCAATGCTGATATGGTGCAAAGCATGTATAAGGTTAACGTTGAAGATATCAATCAGCTGCTGGCATATCACGAAGTTTTCGGTAAATTGTCGACTGATTCTTTAGTTCCCGTACAACAGAACGGCAGCAAAGTACAAGAGGGAAGTGGATCAGTACCCGCTGGAGGTCCGAGCAGTCCCAGCTCAGTTGGACCCTATTCTTGCGATATTTGCTGCAAAATATTTCCGTTTCGTTATCAGTTAATTGTCCACAGACGATATCACACCGAAAGGAAGCCGTTTACTTGTCAGGTGTGTGGAAAGAAGTATACACGCAAGGAGCATTTAGCAAATCATATGCGTTCTCATACGAATGATACTCCCTTCCGCTGCGAGATATGTGGTAAAGCGTTTACAAGGAAAGAACATTTTACAAATCACATAATGTGGCACACCGGAGAAACTCCGCATCGTTGCGACTTCTGCTCGAAGACTTTCACAAGAAAAGAGCATTTGTTAAATCATGTGAGACAACACACCGGGGAATCTCCTCACAGATGCGGGTATTGCAGCAAGTCGTTCACGAGAAAGGAGCACCTTATTAACCACGTGAGACAACACACGGGGGAGACCCCACACAAATGTCAATATTGTTCAAAAGAATTCGCCCGCAAAGATCACTTAACAAACCACGTTCGACAACATACAGGCGAAACTCCGTATCGATGTACTTATTGCCCTAAGGCATTTACTAGGAAAGATCATCTAAACGACCACATTCGACAACACACAGGGGAGACGCCTTATAAATGTCAGTACTGCCCTAAAGAATTTTCGAGAAAAGATCATTTAACCAATCATGTACGACAGCATACAGGAGAAACTCCGTTTAAGTGCCAGTATTGCCCGAAAGAATTTTCAAGAAAAGATCACCTCACGAACCATATTCGGCAACACACAGGCGAAACCCCCTTCAAATGCGATTACTGTCCGAAATGTTTTTCAAGGAAAGACCACCTGACGAATCATACAAGGCAGCACACCGGGGAAACTCCTTTTAAATGTCAATATTGTCCGAAATCTTTTGCAAGAAAAGATCATTTGAACGATCATACTCGTCAGCACACAGGGGAGACACCGTTCAAATGCGTTTACTGCTGCAAAGAATTCAGCAGGAAGGATCATTTGACGAATCATACTCGGCAACACACTGGCGAGCTGCCTTTCAAATGTGATTTTTGTCCTAAAGCATTCAGTAGAAAAGACCACTTAACTGAGCATACACGTCATCACACCGGTGAATCGCCCCACAAATGCCAGTATTGTACGAAGTCCTTTACTCGTAAAGAGCATTTGACAAATCATGTTCGACAACATACTGGTGAGTCGCCTCATCGGTGTCATTTCTGCGCGAAGACTTTCACCAGGAAGGAACATTTAAATAATCACGTGCGCATTCATACTGGTGATTCGCCCCATCGCTGCGAATTTTGTCAGAAGAGTTTTACTAGAAAAGAACATTTAACGAATCACTTGAGGCAACATTCAGGAGAGACTCCTCACTGTTGCAACGTTTGCAGCAAACCGTTTACTAGAAAGGAACATTTAATAAATCATATGCGATGTCACACGGGTGAGCGTCCTTTCGTCTGTAGCGACTGTGGAAAGAGTTTTCCTTTAAAAGGAAATCTTTTGTTTCATCAAAGATCTCACAATAAAGGAGCAGCCGCAGACAGACCTTTCCGGTGCGATTTATGCCCGAAGGATTTCACTTGTAAAGGACATTTAGTCTCGCATCGGAGAGCACATACCGGTGAGCGTCCACACTCTTGTCCCGATTGCGGTAAGACATTCGTGGAAAAAGGGAACCTCTTACGACACGTGAGAAAACACCAGGAGTCAGTCATTGGACATGTGCAGGGTAGCGGTGGCGGGGGAAGTGGAGTAATGCCTCCCCCTTCAGCGCCCCCTCCTCTACCTGTCTTGTCCAATTTAACAACGTATACAGCCCAGATACTCCATCCGACTGTTGTTGTTCCGACTCCTAACCCTGCCCTTACGTCTTACTGA
Protein Sequence: MNSEQATAMSVSVSSASACSGTEENNIVLQRPSGSAAAAAAAAAADLRVGTVALSNVAKYWVLSNLFPGPIPQPVYLNHPPDRMGDIKQELDLSQQVVPTSMEGMTLLHQSTHSQAQGQQPSQPEKETKSERRTCVTERVSDDQVHCRVPCEIPTVSGVQIPGNQPGHPVKSTKSANVSVSRSKSTSSTANYPSTTAAAAATAAAAATTTATTSAASAGTSITQSQHQSQSSSQQSQSQQVTSHHSVETNANSSNHMEESLNCQDIKLTGQMVTTQEIKDENKEIACNIKDNRLIMASFPMQDVKGHMMDIRTADGVVKLTADQDVAKTLLNADMVQSMYKVNVEDINQLLAYHEVFGKLSTDSLVPVQQNGSKVQEGSGSVPAGGPSSPSSVGPYSCDICCKIFPFRYQLIVHRRYHTERKPFTCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGYCSKSFTRKEHLINHVRQHTGETPHKCQYCSKEFARKDHLTNHVRQHTGETPYRCTYCPKAFTRKDHLNDHIRQHTGETPYKCQYCPKEFSRKDHLTNHVRQHTGETPFKCQYCPKEFSRKDHLTNHIRQHTGETPFKCDYCPKCFSRKDHLTNHTRQHTGETPFKCQYCPKSFARKDHLNDHTRQHTGETPFKCVYCCKEFSRKDHLTNHTRQHTGELPFKCDFCPKAFSRKDHLTEHTRHHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCAKTFTRKEHLNNHVRIHTGDSPHRCEFCQKSFTRKEHLTNHLRQHSGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFVCSDCGKSFPLKGNLLFHQRSHNKGAAADRPFRCDLCPKDFTCKGHLVSHRRAHTGERPHSCPDCGKTFVEKGNLLRHVRKHQESVIGHVQGSGGGGSGVMPPPSAPPPLPVLSNLTTYTAQILHPTVVVPTPNPALTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00362690;
90% Identity: iTF_00362690;
80% Identity: iTF_00362690;