Ccol009798.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- DMRT2
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000001.1:10906749-10907955[+]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-25 1.5e-21 75.9 12.3 1 47 22 68 22 68 0.98 2 2 1.8 7.4e+03 -3.2 0.0 26 32 181 187 180 192 0.66
Sequence Information
- Coding Sequence
- ATGAAGATAATTGAAAATGACATTAAAAACAATTCGGAAAACGGCCGAAAGAAAAAGCTTTTAAGAACGCCAAAATGTGCGAAGTGTCGAAATCACGGGATTATATCCTGTCTTAAAGGACATAAAAAACTTTGTTCTTGGAAAGACTGCCAGTGCCCTAACTGTCAACTGGTGGTAGAAAGACAAAGAGTAATGGCTTATCAGGTTGCTTTCAGAAGGCAGCAGAGGTACCACTTCGAAAAATCACGAGGTTTTCTGCAGGAACTTATGATACAAAAGCGTGTTCATCAAAAACAAGTAAAAAACACTCAACAAACTGCCACCGAAAATGCCGGCAAAGAAGTTTTTCAAGATTTTCGAAAGAAATTCAACATGCTGAACAAAAATTTAAATTTCAATGGAAGATTTGGCAGAAGAAATTTATGTCCGGAAGGTCTTCGCGAAATGAGTTCTCTTTCCACTGCATCAAATTTAGGTTTACAAGTGTTTAATTCGCATCCAGGGAAACATTTGCCAGTGTTAAATTCAAGGGTTAATGGTTTTAAAAATTGTGAGGTGTCAAAATTTCACAACGTCTTTTCCGTAAAGCCCTCCGAAGACTGTTACGAAAGTCAAACACTTACGAAGACTTCAGATAGCCCTACTCCAAAACTTTCCTTTTCTATAGAAGCTTTACTGAGTCGATCCAGTTAA
- Protein Sequence
- MKIIENDIKNNSENGRKKKLLRTPKCAKCRNHGIISCLKGHKKLCSWKDCQCPNCQLVVERQRVMAYQVAFRRQQRYHFEKSRGFLQELMIQKRVHQKQVKNTQQTATENAGKEVFQDFRKKFNMLNKNLNFNGRFGRRNLCPEGLREMSSLSTASNLGLQVFNSHPGKHLPVLNSRVNGFKNCEVSKFHNVFSVKPSEDCYESQTLTKTSDSPTPKLSFSIEALLSRSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -