Ccol003871.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000006.1:203474-214485[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-109 1.2e-104 349.8 25.3 1 300 35 327 35 327 0.90 2 2 0.012 2.1e+02 0.9 5.0 120 171 325 376 324 402 0.70
Sequence Information
- Coding Sequence
- ATGTTGTTAACAATGGAAAATTGTCCGACAGTGAGTGGGAGACGTCGTGGTACAACGAAACATTCAGCCGAGGATCAAGCTCTCGATCAAATTGCAAAAGAGGCAGAAGCGAAGCTTGCAGCTCGGAGACAGGCTCGAGTCGAAGCTCGAGAAATACGTTTGCGAGAATTGGAACGCCAGCAAAAAGAGCAAGAAGAAAATGCAGATAAAGTGTTCGATATGTCTTATTCGAATGATAACATTCTTCGGTCGTCTCGGGTTGGTCCTTTAACGGCTTTAATGAATCCTAAGGACCGCTCTGCATTGACTGCTAATAGCTATCACTCAAGTAGGAGAAGTTCTGAAGATTCCGTCGAAGACGGTTCTTACAGTTTAAGAGATATTAAACATGAGTTGAAAGAAGTGGATGAAAAATTTAGAAAGGCAATGATAGCTAATGCTCAATTGGACAATGAGAAGTCTGAATTGGCATATCAGGTGGAGCTATTAAAAGACAAGCTTGAAGATTTGGAAGAGGCCCATGTTCAGCTTTCAAGAGAAAACCGCGAAAAATGCAGAGAACACGAGCAATTAAAAAGAGTGGCGGTGAAGTTGAAAGAAGACCTGTCATATTACAAGAGTCAACTAGAAGAACGAGATAAATTAATTACGGATTACGGCCTAATTATTGTTGGAGGAGAGGACGAAGGGGAAGGACCAACTAACAGAGCATTGGTATCAGCGGAGACAGCAGAATTGCTGCAACAAGCCGGAAATGGATCTCTTGATTGGAGATTAAGAAAATTCGCAGACGAAAGAAATGAACTTTTAGATGAAATTACTCATCTGAAATTAGAGTTAGAAGAAGAGAGGAACAAAAGACGATTGGATGGCAGAAGTGTATATAGTTCCATCGGCAATGGTCCTTTGGACGAAGAAACTAACAAAATATTGAGTGATTATAGATTCAAATTGCAAAAGGCTGAACAAGATGTGTCTACATTGCAGGCCAATGTTGCCAGATTAGAAAGCCAAGTCATACGGTACAAATCGGCTGCTGAGTCTTCAGAGAAAGCTGAAGATGAACTTAAAATAGAAAAAAGAAAATTACAAAGAGAGAATCGTGAATCCATAGCGAGAATAGAAGAGTTAGAAACAGCAAATTCTCATCTTCAGAGACGAATGGACAAATTAAAAAACGCCAAATCAACTTTATTGAAAGAACTTTGA
- Protein Sequence
- MLLTMENCPTVSGRRRGTTKHSAEDQALDQIAKEAEAKLAARRQARVEAREIRLRELERQQKEQEENADKVFDMSYSNDNILRSSRVGPLTALMNPKDRSALTANSYHSSRRSSEDSVEDGSYSLRDIKHELKEVDEKFRKAMIANAQLDNEKSELAYQVELLKDKLEDLEEAHVQLSRENREKCREHEQLKRVAVKLKEDLSYYKSQLEERDKLITDYGLIIVGGEDEGEGPTNRALVSAETAELLQQAGNGSLDWRLRKFADERNELLDEITHLKLELEEERNKRRLDGRSVYSSIGNGPLDEETNKILSDYRFKLQKAEQDVSTLQANVARLESQVIRYKSAAESSEKAEDELKIEKRKLQRENRESIARIEELETANSHLQRRMDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -