Ccol002945.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- tfip11
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000006.1:6118413-6121690[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.24 2e+03 -2.0 0.0 179 206 214 241 200 266 0.69 2 3 3.3e-90 2.8e-86 289.5 24.1 2 275 406 675 405 675 0.96 3 3 0.12 1e+03 -1.0 0.0 155 190 685 719 680 727 0.77
Sequence Information
- Coding Sequence
- ATGTCTGATGAAGAAGTTGAAAGGTTCGAAATAACAGACTATGATTTGGATAGTGAGTTTAATATCCGTCGTCCAAAGAGATTGACTAAAAATGAAATGATATATGGGATTTGGGCTGATAATGAAAGTAGTGGTGATGAAGATAGCTCCAGACGCTCAGCTTTTAAAGGCTCCAAGAAAGCAAAGAACTACACAGCTCCTATAGGTTTCATAGCTGGCGGAATTCAGCAGTCGGGGAAAAATAATGAAAAAGACAAGAAAAAGGAGTCGGACGAATCGGATGACGAAGAAGGAGAGAAAAGTGTGGGTAAAAATAAACCTTCAAGGCAGTATAAGAATTCTTCCTCTGAGGAAAGTGAGGAAGATACTCGACATGCTGGTTTTGGTCACAAGTTTAATAACAGTTTCCCACAAGGTGAAATAGCTGGACTGAGAAAGAAGAAACATTTTGTAGATTCGACATTGATGCAAAAGGGGGTTGGAAACTGGGAAAAGCACACAAAGGGTATTGGAGCAAAATTATTGCTTCAAATGGGTTATGAACCTGGTAAAGGTTTGGGTAAACAGTTACAAGGTATAAGTGCTCCAATTGAAGCAAAATTAAGGAAAGGAAGAGGTGCGATTGGAGCCTATGGACCTGAGGTTAGCCAGAAAATTGCAGAGTTAGTAACTGATGACAAAGACAAAAAAGAAGTTACCCAAAAACTATCCAGATGGAGGAAAAATGATGAGACAGCAAACAAAAAGGTCAAATACATCTTTAAAAGTATTGATGAAGTTATAGAACAGGAAATGACAAACCTACTATTAACGATAGTCAGTGACCGATTTTTGTTTTGTAGCAATCTATCAAAGGTGAAAGTTATAGACATGACAGGACCACAGCAGAGGGTATTGTCTGGTTATCATGCTATTTCTCGACAGCAGAGACCTTCAGATGAATGGGAAACAAGAAAGGAAATGAAATTTGCCAATTTTGCTTTGCCAGAATTGCAACATAATTTAAATCTTCTTGTTGATATGTGTGAACAGGATATTATAGAGAATGACAGGAAGTATAGATATACAAGTGATAAAATCGCGGCTCTTAAGCATGAAACAAGTAGTTTAGAAAGAATCTGTGATAATGAAAAGAAACAAATTGATAAATTAGATGAACTCATTACGATAATACAAGAGTTGACATCTCTTAGTGAAAGTAATTCTCTCTCGATGGACAAGGCAGCTTACACTTTTAGACAATTGCAGGAGGACTTCCATGAGGAATACAGTCTTTATGAAATGTCCGAACTAGCAACTTCTATTGCGACACCTTTAATAAAACAACATCTACAAACCTGGCAGCCTCTCGAAAACCCCAAGGAACCTGTCGAAGTGATGATGGAATGGAAAAATATTTTGGAAAACAAACATTCGAGTGCGTTGTCTAGTCTCTCCAGTCAAGATCCTTTTGGGAAATTGGTCTGGCACGCATGGATACCTTCAGTGAGATTTGCCATAACAAATTGGGATTGTCGAAAACCCGATCCTGTGATGAAGCTAATCGAAGTTTGGATGCATTTACTCCCACGATGGATCACCGAAAACATTTTAGAACATATGGTTTTGTCTCGAATCACTTTATATGTCCACGAATGGGATCCGATGACCGATACCATACCCATTCATGCTTGGATTCATCCGTGGCTTCCTCTTCTTAGTTCCCGCCTTGAATCTGTGATCTATCCAATGATCAGACATAAATTGAGTACGGCGTTGGCGGCTTGGCATCCCAGCGACAGATCTGCCAAGTTTATGCTCTTGCCTTGGAACAACGTGTTCACCAAAGGTGACATGGATTCGTTTCTGGTTAGAAATATCTTACCAAAGCTCGCTCAGATTTTAGACGAGTTTATAATCAACCCTCAACATCAAGTATTAGACGAACATTGGAAATGGGTGATGGAATGGGAGGATCTGATGCCGGTTCACAGCATGGCCACCATTCTCGAGAAACATTTCTTTCCGAAATGGCTTCAAGTTCTGTCTGTATGGTTGAATCACACTCCCAATTACGATCAAGTCACAAGCTGGTATATAGGTTGGAAAAATCAATTTTCAGATGCGTTGCTAAAGCAGCCTAACATCAAAGAACAATTTAAACAAGCCTTAGATTTGATGAATCGGTCGGTGGGAAGCGGACAAATACCTGGAGGCATGGAGTCCATATCATATCTTAAGAATATGGAACGAGATACCTCGACAGCTGCTTCTAGGTTTCAGGCTTCGGAAGCTCTTCGAACGGCTACTCAAGCAAGTATTTCCGGTTATAAATCTCTGTTTGCAAAACGCTGCGAGGAAAAAGATTTGATTTTCATGCCAATTGCAAATAAAACTTACGAAGGGAAACAAGTATACCGATGTGGAAGCGTTCATGTGTACATAGATCGTAATGTGGTGTTCGTTTCACAAAATGGCGGAGCGACTTGGACACCTCAGTCCCTGAACTCGGCGTTAGACATGGCTTCGAACTGA
- Protein Sequence
- MSDEEVERFEITDYDLDSEFNIRRPKRLTKNEMIYGIWADNESSGDEDSSRRSAFKGSKKAKNYTAPIGFIAGGIQQSGKNNEKDKKKESDESDDEEGEKSVGKNKPSRQYKNSSSEESEEDTRHAGFGHKFNNSFPQGEIAGLRKKKHFVDSTLMQKGVGNWEKHTKGIGAKLLLQMGYEPGKGLGKQLQGISAPIEAKLRKGRGAIGAYGPEVSQKIAELVTDDKDKKEVTQKLSRWRKNDETANKKVKYIFKSIDEVIEQEMTNLLLTIVSDRFLFCSNLSKVKVIDMTGPQQRVLSGYHAISRQQRPSDEWETRKEMKFANFALPELQHNLNLLVDMCEQDIIENDRKYRYTSDKIAALKHETSSLERICDNEKKQIDKLDELITIIQELTSLSESNSLSMDKAAYTFRQLQEDFHEEYSLYEMSELATSIATPLIKQHLQTWQPLENPKEPVEVMMEWKNILENKHSSALSSLSSQDPFGKLVWHAWIPSVRFAITNWDCRKPDPVMKLIEVWMHLLPRWITENILEHMVLSRITLYVHEWDPMTDTIPIHAWIHPWLPLLSSRLESVIYPMIRHKLSTALAAWHPSDRSAKFMLLPWNNVFTKGDMDSFLVRNILPKLAQILDEFIINPQHQVLDEHWKWVMEWEDLMPVHSMATILEKHFFPKWLQVLSVWLNHTPNYDQVTSWYIGWKNQFSDALLKQPNIKEQFKQALDLMNRSVGSGQIPGGMESISYLKNMERDTSTAASRFQASEALRTATQASISGYKSLFAKRCEEKDLIFMPIANKTYEGKQVYRCGSVHVYIDRNVVFVSQNGGATWTPQSLNSALDMASN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -