Cpec003909.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- PAXBP1
- Assembly
- GCA_951394395.1
- Location
- OX596351.1:11788378-11801406[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-09 4.5e-05 23.6 0.0 3 50 521 568 519 586 0.90 2 2 6.3e-06 0.075 13.0 0.1 110 148 623 650 611 664 0.80
Sequence Information
- Coding Sequence
- ATGTTTCGGAAACCGAAGAAGATCCAAAGGCGTGTGTTCTGTGCTGATGACGATGACGACGGTGAGCCGGAACCCCCGCCGCCGCCGATCATCAGCCAGGACTCCTTGGAGAAAaaggaaaagaaagaaaggaaagaTAATAAGCCTGTGAAGAGTGTGGCGCTTCTCAGCTTTGCAGACGAAGAAGAGGATTGTGAAGTGTTCCAAGTGAAGAAATCATCCCAGAGCAAGCGTCTGTCCAAACGCAGAGATAAGGAAAGAAAGCGATTGCCAGATGGTGATAGTAACAAATATGACAGTAACGGCCATGAGGAAAACTCAAACCACACAGAAAAGGAACCATCCATCAAGCCAAAGAAAAAAGTGTCTCTGGAAGGGCTAATTCTATCTGGACGAGAAGCATTAGCCGCTGATGGGGCGGGGGATGTATCAGAAGAGGATGGAGAGGGGGAAGAAGAGGAGGATGACAGGGGGTTCCATCGGTACCGTGCGGAGTCGGTCAGGGCTGCGCTGGCGGGCGCGCCCGGGCACATCCCGGACGCCGCGCTCATCCACGCCGCGCGCAAGACCAGACAGCAGGCGCGCGAGCTCGGTGACTTTGTGCCGATCCAGAGCGAGAGGTCGCCCGCGGGCGGCTCGCGGCTCGCGCGCGAGGGAGACGACTCCGACGACGAGGAGGACCGCATACAAGTGAGGGGGCTCGACATGCCCAGCGACAAGCCGCAGCGTGGCACCGCCGCCATAGATCCTGATGAAGAGAACAACAGCGAGGTCGAGGAGTGGGAGGAGCAGCAGATAAAGAAGGCGATGCCTGCTATTGTTGACTTAACAGGTGAATCCGGCATAGAGTTGAATCCGTTCAGTGTGGGTGTGGGTCCtggggcgcgggcggcgcgggtgGCGTGCGCGCCGCACCTGCGGCCGCTGGGCGcgcccggcgccgcgccgcccgcctcCGCGCACCATCTCGTCGCCGCGCTCACTGAGAGGTTGGAGGAGCTGCAACTGGAGCGCATCAACACGTCGATAAAGCGGTCCTCGTGCGCGGCGCGGCTGGCGGGCGCGGTGCGCGTGCGCGAGAGCCGCGGGGCGCGCCGCAACCAGCTGGACGCCGCCTACCGCCGCGCGCAGGCCGTGCGGGGGTACCTCACCGACCTCATCGAGTGCCTCGACGAGAAGATGCCTGCGCTGGAGGCGTTGGAGAGCCGCGCGCTGGCGCTGCAGCGGCGCCGGCACGACTTCCTGGTGGAGCGGCGCCGCGCCGACGTGCGCGACCAGGCGCAGGACGTGCTCGCACTAGCCGCTCGTCCGGGCATGGTGCGGGAACCGGACGGGCCGGAGAAGATCCGGCGCACGGCGGAGCGCGAGGGGCGGCGCCGGGCGCGCCGGCTGCAGCGCGAGGCGACGCCCGGCGCGCCGCGCGAACACCGCGACGGTGACTCCAGCGACGACGAGCTGCCGCCAAAGGAGCACCATCACGCAGTCACGGAGCGAGAAAGCATCCGAGTAGCGGCGGGCTTGGTGTTCGCGGACGCGCTGGAGGCGTGGCGCGGCGTGCGCGGCGTGTGCGCGCGGCTGGCGGCGTGGCGGCGGCGCGACCCGCACGCCTACTGCGACGCGCACCTGCCCGCCGCGCTGCCCAAGCTGCTGGCGCCCTACGTGCGGCACCAGctcATTCTCTGGAACCCTCTGGCCGACGAAGACAACGAGGACTACGAGAAAATGGATTGGTACAATTGCCTGATGATGTACGGcgcgggcgggggcgggggcgggggcggcgggGAAGGCGCAGACTCGTCCGGCTCGGAGGAGGAGGGAGCGGGCGCGCCTCTCAGCGAGGAGGCCGTGCGGGAGGACCCCGACCTCATGCTGGTACCCACCATCCTGAATAAGGTTGTACTGCCCAAGATTACAGAGCAGATAGAGGTGTCGTGGGACCCGATGTGCGTGCGCGCGTGCGTGCGGCTGCGGCAGGTGATGGTGCGTGCGGGTGCGGGtgtgggggtgggggtgggtgTGGGGGGGCGCGCCGCGCTGCGCCgcctcgccgccgccgccgccgcgcgcacCGCCGCCGCGCTCAACGCCGACGTGTTCCTGCCCGCGCTGCCGCCCAATGTGATGgagggcgcgggcggcgcgttCTGGCGGCGCTGCCTGGGCGCCGGCGTGCGGCTGCTGCGCGGCGCGCTCGCGCTCACGGCGCCGCCCGCCATGCTGCGGAACGACATAGCCGTGCTAGCacttatagAGAGGCTGTGCatggcggcgggcgcggcgccgggCGCGTGCATGGTGCAGGCGTGCCTGGCGCTGGCGGACACGCTCCCGCGCGCCACCCGCACCACCCGCGCCACCCGCGCCACCCGCCTGCGCCGCGCCGCCGGAGCCCGCCTCGCGCGCCTCGCCGCGCTGGCGCTGCAGCGCCTGCAGGCTGACAACCCGCTGCATCTAAAAGCGATTGAGCAAGCGCGCGCTGTGATAGCGGAAGCGAAGGCGATGGAATGA
- Protein Sequence
- MFRKPKKIQRRVFCADDDDDGEPEPPPPPIISQDSLEKKEKKERKDNKPVKSVALLSFADEEEDCEVFQVKKSSQSKRLSKRRDKERKRLPDGDSNKYDSNGHEENSNHTEKEPSIKPKKKVSLEGLILSGREALAADGAGDVSEEDGEGEEEEDDRGFHRYRAESVRAALAGAPGHIPDAALIHAARKTRQQARELGDFVPIQSERSPAGGSRLAREGDDSDDEEDRIQVRGLDMPSDKPQRGTAAIDPDEENNSEVEEWEEQQIKKAMPAIVDLTGESGIELNPFSVGVGPGARAARVACAPHLRPLGAPGAAPPASAHHLVAALTERLEELQLERINTSIKRSSCAARLAGAVRVRESRGARRNQLDAAYRRAQAVRGYLTDLIECLDEKMPALEALESRALALQRRRHDFLVERRRADVRDQAQDVLALAARPGMVREPDGPEKIRRTAEREGRRRARRLQREATPGAPREHRDGDSSDDELPPKEHHHAVTERESIRVAAGLVFADALEAWRGVRGVCARLAAWRRRDPHAYCDAHLPAALPKLLAPYVRHQLILWNPLADEDNEDYEKMDWYNCLMMYGAGGGGGGGGGEGADSSGSEEEGAGAPLSEEAVREDPDLMLVPTILNKVVLPKITEQIEVSWDPMCVRACVRLRQVMVRAGAGVGVGVGVGGRAALRRLAAAAAARTAAALNADVFLPALPPNVMEGAGGAFWRRCLGAGVRLLRGALALTAPPAMLRNDIAVLALIERLCMAAGAAPGACMVQACLALADTLPRATRTTRATRATRLRRAAGARLARLAALALQRLQADNPLHLKAIEQARAVIAEAKAME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -