Cpec015283.1
Basic Information
- Insect
- Colostygia pectinataria
- Gene Symbol
- -
- Assembly
- GCA_951394395.1
- Location
- OX596367.1:2234217-2234894[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-06 0.0025 17.9 0.0 1 34 8 40 8 48 0.88 2 2 0.06 37 4.5 0.0 22 43 75 96 72 98 0.84
Sequence Information
- Coding Sequence
- ATGGCGCCAAAAAAAGAATATACTCCTAAGCAAATGGGAGATGCTATTGCAGCAGTACAAGGCGGTGAACCTGTTGCAACTGCAGCAAAGCGCTTTGGAGTTCCACGCATCACTTTACGCAACAAAACGACAGGTAAAAGTCCCATGGAATGTAGAATGGGACCTGCTACAGTACTAACAAATACAGAAGAGGAACTGTTGGTAAAATGGCTTATTGCGATGGCACAAAGAAGATTTCCTATTTCTAAGGACACTCTCCTGGATAGTGTACAGCGAATCATAACAGCTACTAATAAAACAAATCCTTTTACCGAAAACCGACCAGGCAGTAAATGGTTTGCATCATTTTTAAAAAGACATCctgacatagctcaaaggacaGCTGAAAATCAAACCTCCGCAAGAGAAAACGTCACTGAACAACAAATAGTGAACTGGTTTGGAGAAGTTGAGGAGTATTTAACATATGTAGGTCTACATCAGGCTTTCGAAGACCCATGCAGGGTTTTTAACACAGATGAAAGTGCTTTCTTTCTCTCGCCGAAACCTGGACAAGTGCTCGTTAAACGAGGTGAAAAGCACGTTTATGCTGCAAGTGGCGATGAAAAAGAGAACTTAACGGTTTTGGTGACTGCGAAAGCTGCGGGAAAACTTGCACCACCAATGATAGTTGATTGA
- Protein Sequence
- MAPKKEYTPKQMGDAIAAVQGGEPVATAAKRFGVPRITLRNKTTGKSPMECRMGPATVLTNTEEELLVKWLIAMAQRRFPISKDTLLDSVQRIITATNKTNPFTENRPGSKWFASFLKRHPDIAQRTAENQTSARENVTEQQIVNWFGEVEEYLTYVGLHQAFEDPCRVFNTDESAFFLSPKPGQVLVKRGEKHVYAASGDEKENLTVLVTAKAAGKLAPPMIVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301103;
- 90% Identity
- -
- 80% Identity
- -