Cgig003706.1
Basic Information
- Insect
- Colletes gigas
- Gene Symbol
- -
- Assembly
- GCA_013123115.1
- Location
- WUUM01000008.1:610436-611899[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 2e+03 -1.6 0.1 35 42 23 30 21 31 0.81 2 3 2.5e-13 5e-10 38.8 0.1 3 42 35 73 35 77 0.85 3 3 0.97 1.9e+03 -1.5 0.0 14 21 88 95 86 96 0.81
Sequence Information
- Coding Sequence
- ATGGGCTTGAATGTGACCCGAAAGACGGTATCCCGAAATCGACTCTATTATCAGAACGGAAGTGCAAGATATTTCAGAAGACATTACGGGAAATGCGAATTCGAGCACATGAAAAACGCCATCGAGGCCGTGGCCAGCGGACTGTCCTTGAGGAAGGCGGCCAAGCTCTACTGCATATCAAAGTCTGTTCTCCATCGTTACAGTAAACAGGGAATTTCCTCTCTGCAGAAGAAAGGCGAGGATGGAGTTCCTGAACTATCAGAAGGTGACCTATCCGTGCAAAAACTGCGGCAAGGTCTACAATTACTACTCCAGTTTGGCGAGGCATTTGAAACACGAGTGCGGCATGGAGCCGAAGTTCCACTGTCCGTTGTGCCCTTACAGGACGAAGCACAACTGTCGTCTTCCGCGGACGCTGGAAACTAG
- Protein Sequence
- MGLNVTRKTVSRNRLYYQNGSARYFRRHYGKCEFEHMKNAIEAVASGLSLRKAAKLYCISKSVLHRYSKQGISSLQKKGEDGVPELSEGDLSVQKLRQGLQLLLQFGEAFETRVRHGAEVPLSVVPLQDEAQLSSSADAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00360133;
- 90% Identity
- iTF_00360133;
- 80% Identity
- -