Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.4 4.2e+03 -1.6 0.1 35 42 27 34 25 35 0.81

2 3 3.6e-13 1e-09 38.7 0.1 3 42 39 77 39 81 0.85

3 3 1.4 3.9e+03 -1.6 0.0 14 21 92 99 90 100 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.4	4.2e+03	-1.6	0.1	35	42	27	34	25	35	0.81
2	3	3.6e-13	1e-09	38.7	0.1	3	42	39	77	39	81	0.85
3	3	1.4	3.9e+03	-1.6	0.0	14	21	92	99	90	100	0.81

Coding Sequence: ATGAAAATaaactttttcttttcttttccgaCAAATCCCGCGCCAGAAACAGGACTCTATTATCAGAACGGAAGTGCAAGATATTTCAGAAGACATTACGGGAAATGCGAATTCGAGCACATGAAAAACGCCATCGAGGCCGTGGCCAGCGGACTGTCCTTGAGGAAGGCGGCGAAGCTCTACTGCATATCAAAGTCTGTTCTCCATCGTTACAGTAAACAGGGAATTTCCTCTCTGCAGAAGAAAGGCGAGGATGGAGTTCCTGAACTATCAGAAGGTGACCTATCCGTGCAAAAACTGCGGCAAGGTCTACAATTACTACTCCAGTTTGGCGAGGCATTTGAAACACGAGTGCGGCATGGAGCCAAAGTTCCACTGTCCGTTGTGCCCTTACAGGACGAAGCACAATCGTCTTCCGCGGACGCTGGAAACTAG
Protein Sequence: MKINFFFSFPTNPAPETGLYYQNGSARYFRRHYGKCEFEHMKNAIEAVASGLSLRKAAKLYCISKSVLHRYSKQGISSLQKKGEDGVPELSEGDLSVQKLRQGLQLLLQFGEAFETRVRHGAKVPLSVVPLQDEAQSSSADAGN

Sequence clustering based on sequence similarity using MMseqs2