Basic Information

Insect: Colletes collaris
Gene Symbol: -
Assembly: GCA_030068185.1
Location: JASGYR010000079.1:5203929-5210539[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.88 1.1e+02 4.4 0.7 1 23 80 105 80 105 0.97

2 17 0.31 38 5.8 1.3 2 23 118 139 118 140 0.93

3 17 5.9 7.1e+02 1.8 3.7 1 23 146 168 146 168 0.97

4 17 0.038 4.5 8.7 0.5 2 23 174 195 173 195 0.97

5 17 0.0017 0.2 13.0 2.3 2 21 474 493 473 493 0.95

6 17 2.5 3e+02 3.0 1.0 1 23 561 583 561 583 0.82

7 17 4.5 5.3e+02 2.2 0.2 3 23 792 812 790 812 0.93

8 17 0.0093 1.1 10.6 0.3 1 23 820 842 820 842 0.98

9 17 0.13 16 7.0 1.1 2 23 939 960 938 960 0.96

10 17 0.44 53 5.3 1.4 3 23 972 992 970 992 0.95

11 17 0.0035 0.42 12.0 0.2 1 23 1069 1091 1069 1091 0.98

12 17 0.039 4.7 8.7 0.3 1 23 1163 1185 1163 1185 0.97

13 17 7.9e-05 0.0094 17.1 0.6 1 23 1191 1213 1191 1213 0.97

14 17 0.0058 0.69 11.3 2.6 1 23 1260 1282 1260 1282 0.97

15 17 0.00094 0.11 13.8 1.7 1 23 1288 1310 1288 1310 0.99

16 17 0.089 11 7.5 2.6 2 23 1401 1422 1400 1422 0.97

17 17 8.6 1e+03 1.3 0.3 2 23 1430 1451 1430 1451 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.88	1.1e+02	4.4	0.7	1	23	80	105	80	105	0.97
2	17	0.31	38	5.8	1.3	2	23	118	139	118	140	0.93
3	17	5.9	7.1e+02	1.8	3.7	1	23	146	168	146	168	0.97
4	17	0.038	4.5	8.7	0.5	2	23	174	195	173	195	0.97
5	17	0.0017	0.2	13.0	2.3	2	21	474	493	473	493	0.95
6	17	2.5	3e+02	3.0	1.0	1	23	561	583	561	583	0.82
7	17	4.5	5.3e+02	2.2	0.2	3	23	792	812	790	812	0.93
8	17	0.0093	1.1	10.6	0.3	1	23	820	842	820	842	0.98
9	17	0.13	16	7.0	1.1	2	23	939	960	938	960	0.96
10	17	0.44	53	5.3	1.4	3	23	972	992	970	992	0.95
11	17	0.0035	0.42	12.0	0.2	1	23	1069	1091	1069	1091	0.98
12	17	0.039	4.7	8.7	0.3	1	23	1163	1185	1163	1185	0.97
13	17	7.9e-05	0.0094	17.1	0.6	1	23	1191	1213	1191	1213	0.97
14	17	0.0058	0.69	11.3	2.6	1	23	1260	1282	1260	1282	0.97
15	17	0.00094	0.11	13.8	1.7	1	23	1288	1310	1288	1310	0.99
16	17	0.089	11	7.5	2.6	2	23	1401	1422	1400	1422	0.97
17	17	8.6	1e+03	1.3	0.3	2	23	1430	1451	1430	1451	0.79

Sequence Information

Coding Sequence: ATGTCAGGAAGATTGCCCCGTCTGCGTGCACTTCGTCCACGACCTCAACAGCTCAAGACCGAGCTACGCAAGGAAGGTAACCTTAAAGAGGACCGACAAGGAATCGCGATGAGAGAGCACGAGTCGCACAATAATATCGAGAAGACCTCGTACAATGACAAAAATGATGGATCCGCGAAGAGCAACTTGAAGGGCGATCATGATGGCCTCCTCGACGGTTCGGGACCTTCTCAAAGTTACGAGTGCAAAACATGCAAACCATCAAAGTCATTATCGAGTCTTAAGGCGTACCTCGATCATCTGAAAAAGGAGCACAAACAAAAGGGAAAATTTGTACGCGATGCTGGCAATCGATGTTCAATGTGTTCGTATGTTGCACTAAATTCAAGGGACCTTGAAACACATCAAAGAGTGCATCATTTAAAAAGAAGATTCTTTCGATGTGCTAAATGTTCTTATGTAACACATGTACGTGCTCGttatacaaaacatgtaaaATATCATTCTATGCCGATGATCAAGTGTGATGCCTGTGATTTTCGTACACCGTACAAGTGGAATTTGGACAGACATACTCGAAATCATGGAGGAGTTGGTGCTTTTCAGTGTTGTGTTTGCAATTTCACAGCTGATATCAGGCAGAGTTTAACAGTGCACGAGACCAATCATCATGAGCCACCTGTAGGTCAAACAAACCACAAGTCTAATGCACCTTTCGAGCGCAAACCAAGAAATAGTCCCAAGCGTTATAATCAGGTGGGTGCAAGTGACTTTCGGGAAACATTACATATATCTGGGAGTACAATGCTGTCCCTCAGTCCTGGAGATTCGTTCGTTTCCGATCAGTCAATGAATTCCATAGATGATAAACGAACTGCAATAGCTAATGCAGAGTGCATAGCGCTAAAATGCGAAGAGAAAGGCTGCCAATTTATTACTGCATGGGATTCTGAAATGCAACGACACTTAGCAGAATGTCATGCTCCGCTTACACCTAATAAATCTAGAAAACCACTGCCAATGTTGATACCATTGAGTCCTAGTAAATGTAGCGGTGGTACCAGTGGACCTTCCACTACACTATTAAAAGTTCCACGAGTGAGAGTTAGACCAGAACTCGCACAAATAGCCAGAGATACGGAATTGGCCAAGTTGTATGGGAATAAAGAAGCCAGCAACTTAAAGAAGGATGCAAATAATGCAGCAGatttgtttgaaaaaaaaaatgcgtCCTTCTTTGATAAGTTAAAGGAAAAGCTTACAACATCGGCGTCAATTAATAACGGAGTAGCGGAGGTAGCTGTAAGTACtacgaacgatttgaaatgctgGTGTACTTTTAAAGCTAGTAGCATGGAGGAGCTGGCTTGTCACAAACAAACACACCACACTGCTCTCAGTGTATCTGTGGGTACAACGCGTTGCCCTAAGTGCAGAAGACGTTGCAAAAGTTCGACTGATCTACAAGCGCATATGCAGTGTTGTCGCTCGACAAGCAACGATACGTCCATAGACAGTAGCTTAGAAAAATTATCGAATTGTTCAGAACTACGTGTGACCTCGTATCGCGGTGAATATGCATTCCCTGCGCAAACGGATTGGGACGTTAATCTCAGTGGACTGAATTCTTCTGGATCATCGGTTGAAGGCGCCTCGACACATCCAAGCGGCCGACGGGTATTCAAATGCCCGCATTGTCCATTTTGGGCATCCACCGCAAGTCGCTTTCACGTTCATATTGTCGGTCATTTAAATCGGAAGCCATTCGAGTGTTCCCTGTGCGCGTATCGCTCTAACTGGCGGTGGGACATCACAAAACATATTAAACTTAAAGCAGCTAAAGATCCAGTTCATATGACTGCCAGGGTACTTATGACGGATGAAACAGGTCGACGGAATTATTCCAAGTATAACAAGTATCTTGCACAGGTCGAGCAACAGTCATGGGACGAACAAAACATGGAAGAACGTAGCGTGGAAGAATCTATTTCCGACGAGCCGCCGACTAAGCTGTTAATAATGAACAATGATGAGTATTTACAAGCACCAGAGCTTACGTCCACTCCCGTTTCAACCGTGTCCACGAACGAAGAGAGTAATAACGCTAATAGTATTAATGTTGGTCTGAGACCACCGCCTCCGCTTAAAGCTGCCGCTAGAAATCGAGGACAATCTgtgctaaaaaataatttgatctCCACGCATGGACAATGCGGATCTCCTTCTACTTCGATCACGGAAGAAAGCAAACGCACTATGTGGAAGTGCAAGCGTTGCAACTTTAGACATTCAAATAGGGACACTGTGTCGTTGCACGTGAAATCTCACAACGAATCGGAACAACGCCACGGAGAAGAAAAAAATCCGTTTGGCTGTGGCGACTGTCCATTTTCCGCGCCCGATGCTACAACTTTGTCAATGCACAGAGTACATCATCGTCCGAACTTGGAAGCCATTTTCAAATGCTACCTCTGTCCATACTACGTTAGCACGAAAGTAGAGTTATTGGACCACGTTAGACTTCACGGCGAAGAACTTGCTGTTGTTCATCAACAAAATATGGACTATAATTACACATCTGCTAAATATAAATCGCAACACGCTTCGAATATCGATAACAATATTAATCGAATGAAACAAGAGAAGAACGTAGAACAGGTGATTCATATAACTACGCAGAACAATGTGACTTGTATCGCCAACGCTTCAAAGAATTCCAATACACCGCCACCGCTGCTTCTAGATACCCGAGCGCTGCCAGAGGCCCCATTAGTTTGGGTGACTCGCCCGGACGGTACGCTCTCAAAAATGCTGAAATGTCGTCATTGCCCCTTCGTTTCTTCGCGACGTGCCGAAGTTCGAGATCACGAAAGTATGCATCTCGATTCCCCTAATCATGGACACGTGATCGCTTGCACCGATTGTAGTTTCACCTGTACGCGAAGAGACGTGATGGTTACTCACACGGACATGCATTCCGGGTCGTTGGGTACCGTTCACTGTCTAGTAGACGATACGAGACCAGATTCGCAACAATTGAGCGACTTAGTTACGCTTCTCGGATTCACGCATCCTCCTGTGTTAGGTTCAGAGCCCGATCTGCGAGATTCGAGGCTGGTACACTGCTGTAGCAAATGCCCGGCACGATTCCTATGCGAGAAAGAGTTGAGGATCCATTTACGATACCATTCCACGGAATTAGCTTATTCTTGTCAATGGTGTTCGTACGCTGCCCGCCAACCGGCCCATCTGTTAGCCCACCAAAAAGCACACTCTACGGAGTATCAAGAGCGTACCAAGTATTTATTGTCTCTGTACGGCCATTCGCAACGATACTCACCTCCAACCACGGCTTGCGTCGAAGCAGGCGGTCAAGACTCGACCAACTCGGCGGCGGCCGCAATCGCGTGGATCGTTGTGGAAGTTTCTGAAAACTCGAGCAACAGCTTCAATAACAACGCGAATCAACGAACGGGTAATCAAGTGTTCACGTGTGCGAAATGCCCGGCTCGTTACTTCAAGCTGGACGCTCTGGAGTACCATATGACGTTGCACGGATCGAACAACAGATTCAGATGCACCGAGTGTGATTATTCGTCGAAAACGGCACAGAATCTGGTGAAGCATCAGGTCGTTCATCGACGGCAGAACGAAGCGAGTGAGTTGACCTCGAATCTGTCGCCGCCCCCTGATCCACAGTTCGGAATCTTCATGCGTGGAAACCCCAATTTCGTGTACCCTGGTTATCTAAGGAACGGTCGGTTGAAAGAGAAACGGTACAAGTGTCACAAATGTCCCTCTGCGTTCGAGAAACGAGAACAGTACAGGGTTCATTTGACGTTGCATGGCGCGAAACAGAGATACCGTTGCGACACTTGCGACTATTCCGTTAAGTACTATGCCAATTACATTCAACATTTGAAGAAACATCAGGCGAACGCGGAGGCACAAGCCTCGCGCAGACAATTCGAGGACGACACGATTACTATCGACAGCGACAACTTTACAGACAATATAGGCTCTGTGTCTCGTTCGGGCAAGACTCTGAAGTCGTCGAATAACGCGGTGACGATATGCGTGAACGGGACATCGATGTTGAATTACGGCGGGGTTCAAGCCTCGAATCAAGATAAACAATCTTTGTTATTGCTACAGAAAAAGGGAATGCTTCTGTCGCCCAACGAGGAGGTGGAGACTTTACGCTGCCAAAGTTGTCCGTTCTCCACGTGCGACAAAGACGCGTTGGATTCCCACAAACGTCGACACGGCATCGAGAGAATGACACCGTCCTGTCCACACTGCGATTATATACCGCGTAAAGATGAGAATGTCGGCGAACATATCAGGCTACATTTCACGAGACTCTACAAACCGGAATCCTATCTCATCATAGAACTCTTGACGTTGACAATGAGAAAAATAGCGACGAACGGGAAGGAAGAGAAACAAAAGGCTGCGGAATTACTGTTTAAAGAATGCGCGGATGGAAGATTCTTTCCGCTCGCCGATGCGAATTCCTTCGGCGGTACGTCTACCGTGAACAATTGCAAGGAAAAAGTTATAGTGGATCCTAACACAGGAGAGACGAAACATTTGGCCGTTTAA
Protein Sequence: MSGRLPRLRALRPRPQQLKTELRKEGNLKEDRQGIAMREHESHNNIEKTSYNDKNDGSAKSNLKGDHDGLLDGSGPSQSYECKTCKPSKSLSSLKAYLDHLKKEHKQKGKFVRDAGNRCSMCSYVALNSRDLETHQRVHHLKRRFFRCAKCSYVTHVRARYTKHVKYHSMPMIKCDACDFRTPYKWNLDRHTRNHGGVGAFQCCVCNFTADIRQSLTVHETNHHEPPVGQTNHKSNAPFERKPRNSPKRYNQVGASDFRETLHISGSTMLSLSPGDSFVSDQSMNSIDDKRTAIANAECIALKCEEKGCQFITAWDSEMQRHLAECHAPLTPNKSRKPLPMLIPLSPSKCSGGTSGPSTTLLKVPRVRVRPELAQIARDTELAKLYGNKEASNLKKDANNAADLFEKKNASFFDKLKEKLTTSASINNGVAEVAVSTTNDLKCWCTFKASSMEELACHKQTHHTALSVSVGTTRCPKCRRRCKSSTDLQAHMQCCRSTSNDTSIDSSLEKLSNCSELRVTSYRGEYAFPAQTDWDVNLSGLNSSGSSVEGASTHPSGRRVFKCPHCPFWASTASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIKLKAAKDPVHMTARVLMTDETGRRNYSKYNKYLAQVEQQSWDEQNMEERSVEESISDEPPTKLLIMNNDEYLQAPELTSTPVSTVSTNEESNNANSINVGLRPPPPLKAAARNRGQSVLKNNLISTHGQCGSPSTSITEESKRTMWKCKRCNFRHSNRDTVSLHVKSHNESEQRHGEEKNPFGCGDCPFSAPDATTLSMHRVHHRPNLEAIFKCYLCPYYVSTKVELLDHVRLHGEELAVVHQQNMDYNYTSAKYKSQHASNIDNNINRMKQEKNVEQVIHITTQNNVTCIANASKNSNTPPPLLLDTRALPEAPLVWVTRPDGTLSKMLKCRHCPFVSSRRAEVRDHESMHLDSPNHGHVIACTDCSFTCTRRDVMVTHTDMHSGSLGTVHCLVDDTRPDSQQLSDLVTLLGFTHPPVLGSEPDLRDSRLVHCCSKCPARFLCEKELRIHLRYHSTELAYSCQWCSYAARQPAHLLAHQKAHSTEYQERTKYLLSLYGHSQRYSPPTTACVEAGGQDSTNSAAAAIAWIVVEVSENSSNSFNNNANQRTGNQVFTCAKCPARYFKLDALEYHMTLHGSNNRFRCTECDYSSKTAQNLVKHQVVHRRQNEASELTSNLSPPPDPQFGIFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCDTCDYSVKYYANYIQHLKKHQANAEAQASRRQFEDDTITIDSDNFTDNIGSVSRSGKTLKSSNNAVTICVNGTSMLNYGGVQASNQDKQSLLLLQKKGMLLSPNEEVETLRCQSCPFSTCDKDALDSHKRRHGIERMTPSCPHCDYIPRKDENVGEHIRLHFTRLYKPESYLIIELLTLTMRKIATNGKEEKQKAAELLFKECADGRFFPLADANSFGGTSTVNNCKEKVIVDPNTGETKHLAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00762862;
90% Identity: iTF_00361250;
80% Identity: -