Ccol028214.1
Basic Information
- Insect
- Colletes collaris
- Gene Symbol
- dmd-4
- Assembly
- GCA_030068185.1
- Location
- JASGYR010000374.1:9651521-9654593[-]
Transcription Factor Domain
- TF Family
- DM
- Domain
- DM domain
- PFAM
- PF00751
- TF Group
- Zinc-Coordinating Group
- Description
- The DM domain is named after dsx and mab-3 [2]. dsx contains a single amino-terminal DM domain, whereas mab-3 contains two amino-terminal domains. The DM domain has a pattern of conserved zinc chelating residues C2H2C4 [1]. The dsx DM domain has been shown to dimerise and bind palindromic DNA [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-25 7.1e-22 77.8 10.7 1 47 22 68 22 68 0.99 2 2 1.3 8.3e+03 -2.4 0.5 3 9 348 354 347 355 0.65
Sequence Information
- Coding Sequence
- ATGCTGCGCGGGAAGAGCAGGAACAAGTCGGAGAACGCGGAGGACGAGGGCCAGGCGAAACAGAGGAAGCCGAAATGCGCGCGTTGTCGAAATCACGGCCTGATCTCTTGGCTGAGGGGTCACAAGAGGGAGTGTCGTTATCGCGAGTGCCTCTGCCCAAAATGCTCTTTGATAGCGGAGAGACAGAGGGTGATGGCGGCCCAGGTGGCCCTGAAGAGACAGCAAGCGGCCGAGGACGCGATCGCCCTCAAAATGGCCAAAGTGGCGACCGGTCAGAAGCTCAATCGACTTCCGCCGGGGAAAATATTCGGAATGGCTATCACCGAGCCTAAGCCCGCGACAGAAGCCAACCAGGATGCCGATCCTCCTCACAAAGAGGACGAGAAGGCGTCGGAAGACTCGAGGAAGGACTCGTCAAGAGACCAGTGCCACGAGCCTCCGTCGATCTCGGAAGACTTCCCAAAATACAAGAGCCAGGTGTTCAACGGGAACAGCCCGGACGACGCGAAGGAGGCTAGCGTGTCGCAGACCTCGGTGGACACTCTGGCACGTCTTTTCCCCAACACGAAGCTCTCGGTGCTGCAGCTGGTGTTGCAGAGATGCGGCCAGGACCTGTTGAAGGCGATCGAGTATTTCGCCAGCGACAGTTTTGGCATCGGTTCGAGCACGTACTCGTCGGCCTTTCGACCGCCGGCGCAGAGCATCGCCGAGGCCAGGCCGAACGAGCAGCTCGCGAACACGATGCTGGCGCCAATTTACTCCAGCCTGTCGAGGAGCTTCTACGGGGATGGTTACTGCTTGTTGAACATCGTCCCGGAACAATTCCCAAAGAGCATCGTCGCGGACGCGTTGCCCATCAAGAACAATAGCCATCAAGAGCAGGATAGCGTTGCCCTGAACATTCAGTATAACAGTTACTTTCATTCTGGGATGCAGCAGCAGCTACGGGATCACGTTTACGCACAAGTCACGGACCACCTTTCTCCCAGGCCCGGGTTCCTCCACTTGCCATCCATGATGTCGGGGATTCCCTGCGTGCAGCCCAATTGCCCTCAGTGCAGCTACAAGTTCCCCTGA
- Protein Sequence
- MLRGKSRNKSENAEDEGQAKQRKPKCARCRNHGLISWLRGHKRECRYRECLCPKCSLIAERQRVMAAQVALKRQQAAEDAIALKMAKVATGQKLNRLPPGKIFGMAITEPKPATEANQDADPPHKEDEKASEDSRKDSSRDQCHEPPSISEDFPKYKSQVFNGNSPDDAKEASVSQTSVDTLARLFPNTKLSVLQLVLQRCGQDLLKAIEYFASDSFGIGSSTYSSAFRPPAQSIAEARPNEQLANTMLAPIYSSLSRSFYGDGYCLLNIVPEQFPKSIVADALPIKNNSHQEQDSVALNIQYNSYFHSGMQQQLRDHVYAQVTDHLSPRPGFLHLPSMMSGIPCVQPNCPQCSYKFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00360927;
- 90% Identity
- iTF_00360927;
- 80% Identity
- -