Ckir011578.1
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- ham
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010012442.1:1-669[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00043 2.8 9.0 0.1 26 45 45 64 38 68 0.91 2 4 3.8e-05 0.24 12.3 0.4 21 45 68 92 64 97 0.89 3 4 0.00026 1.7 9.7 0.2 20 45 96 121 92 127 0.88 4 4 2.4 1.6e+04 -3.1 0.0 35 41 187 193 185 195 0.80
Sequence Information
- Coding Sequence
- AATGGCGGAGCATCTGCCTCACGCCATGTGCCGTTTCCGCCCGAGCCAAACTTCCACGAGGCTCTTCTGGCCGCAGGACTGAAGCGTGGCGATGGCCGTTCCCCTGGTGGCGGCAAGATCAAGGATCGCTACACTTGTAAGTTCTGTGGCAAAGTCTTTCCCAGATCGGCCAATCTAACGCGTCACCTGAGAACCCACACTGGAGAGCAGCCCTACACCTGCAAGTATTGCGATCGAGCCTTTAGCATCTCATCAAACCTGCAGCGTCATGTGAGGAACATACACAACAAGGAACGGCCCTTTATATGTAAGTTGTGCGATCGTTGCTTTGGCCAGCAGACGAATCTTGATCGTCATTTGAAAAAGCACGAGGCTGATGCCACGGGAAACTTTAGTGGCTTCGGAGACTCCCCCAGTTCGGCTGAGGCAGATCGCGAAGATTCCGAATCTTTCTTTGATGACATACGAAATTTTATGTCCCATCGAGTTTATACGCCCACCAGCTTGGGTGGAGCGGACGGTGATACAGAGGATGATGATCAGCTGTCGGTGTCTACGCGACAATCGGCCAATTTGGACAAGCAACAgggtagcaacaacaataataacagcagcagcaataacaacaacaatagcagtaACAACGAATCGATTGCCGTCAGttcttaa
- Protein Sequence
- NGGASASRHVPFPPEPNFHEALLAAGLKRGDGRSPGGGKIKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFICKLCDRCFGQQTNLDRHLKKHEADATGNFSGFGDSPSSAEADREDSESFFDDIRNFMSHRVYTPTSLGGADGDTEDDDQLSVSTRQSANLDKQQGSNNNNNSSSNNNNNSSNNESIAVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00359590;
- 90% Identity
- iTF_00359590;
- 80% Identity
- iTF_00359590;