Ckir006394.1
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- -
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010003614.1:189-1439[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0027 17 6.4 0.1 19 45 105 131 99 137 0.88 2 9 0.0027 17 6.4 0.1 26 46 140 160 133 166 0.85 3 9 0.024 1.5e+02 3.4 0.2 21 44 163 186 158 195 0.89 4 9 0.13 8.2e+02 1.1 0.1 22 45 220 243 215 252 0.68 5 9 1.9e-05 0.12 13.3 0.1 21 43 275 297 264 302 0.87 6 9 0.0087 56 4.8 0.1 21 44 303 326 298 330 0.87 7 9 0.079 5.1e+02 1.7 0.0 21 44 331 354 326 358 0.75 8 9 0.015 96 4.0 0.1 21 45 359 383 354 390 0.88 9 9 0.3 1.9e+03 -0.1 0.2 21 44 387 410 383 413 0.87
Sequence Information
- Coding Sequence
- ATGCCACCAGTACAACCTGATCCCGACACTCAATGTAGCCCTAAAGCCCAACGTGCACGCGGCATTGCTAGTGCCCGCAGCAGTGTGAGATCGGGTTTGCATGGAGCAtatgaaactgaaaatataGATGCTGTGCGCGTTAAGGTGGAACACCAAGAAGACGACGAGCTTGAGCTTTATACAGAAATTGACGTGGGCCTTGTTAAAATAGAGGACAAATGTGACAACGCGGACGTGGATGAGCAATCACATGCGCTGCCAGAAGAAATTAATGATGAACCATTGCAGTTCAAAGGCGTTGATAAAGAAACATCAACAGTCAACAGACCATTCCAGTGCCCAGACTGTGTTAAATCCTTTACCCAAGAATCATCTCTCAAACGCCACATTCGAACGCATACTGGGGAGCGCCTATTCCAGTGCAGCAAATGTTCGGCGATATTTTCTCAAAATTCCGATCTGAAACGCCATATGCGAATTCATACAAACGAAAGACCATACGAGTGCGCTTTTTGTCAAAAGACATTTGCACAGAACTCTGATCTCAGAAGCCACACTCGCACTCACACAGGCGAACGTCCGCACAAGTGCACAGATTGTGAAAAAACGTTCACACGAAAGTCCTATCTGCTAGAGCATATGCAAACCCACACTGACGAAAGCCCGTTCGAGTGCAAAGAGTGCGTGAAGttatttaaaaccaaatcagGCCTCAGATGCCACCTGCGCACGCATTTGGAGAAAAGACCCTACAGCTGCATGTActgtgaaatgaaatttgcacATTTGCACACTCTAAAAGTCCATGCTCGTATTCATACTGGAGAACGGCCGTACACGTGCCCACAATGCTTTAAGTCATTCACACAGGAGTACAATTTTAAGCGACACGAACAAACGCACTCGGGCGACCAGCCGTACAAGTGCCCTCATTGCTCGAAGGCCTTTACTCGggagtttaatttaaaaatgcatatcCGCAGTCATACTGGTGAGCAACTGTTCGATTGCCCCGTTTGCTCAAAATCATTTACACTGAAGTCCAACATGGATGTGCACTTGCGAACCCACACTGGAGAGCGTCCGTACAAGTGTGATATTTGCTCCAAGGCATTTACCCAGGAGCCCACGCTCAAGATACACCTGCGAACGCATACTGGAGAGCGGCCGTACAAGTGTACACATTGCTCAAAGGCATTTGCACATTACTATAACTATAAACGACATATTCGCACTCATACTGACGAGTGA
- Protein Sequence
- MPPVQPDPDTQCSPKAQRARGIASARSSVRSGLHGAYETENIDAVRVKVEHQEDDELELYTEIDVGLVKIEDKCDNADVDEQSHALPEEINDEPLQFKGVDKETSTVNRPFQCPDCVKSFTQESSLKRHIRTHTGERLFQCSKCSAIFSQNSDLKRHMRIHTNERPYECAFCQKTFAQNSDLRSHTRTHTGERPHKCTDCEKTFTRKSYLLEHMQTHTDESPFECKECVKLFKTKSGLRCHLRTHLEKRPYSCMYCEMKFAHLHTLKVHARIHTGERPYTCPQCFKSFTQEYNFKRHEQTHSGDQPYKCPHCSKAFTREFNLKMHIRSHTGEQLFDCPVCSKSFTLKSNMDVHLRTHTGERPYKCDICSKAFTQEPTLKIHLRTHTGERPYKCTHCSKAFAHYYNYKRHIRTHTDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00359595;
- 90% Identity
- iTF_00359595;
- 80% Identity
- iTF_00359595;