Ckir003019.1
Basic Information
- Insect
- Collessia kirishimana
- Gene Symbol
- Aef1
- Assembly
- GCA_035078785.1
- Location
- JAWNPV010001153.1:4299-5266[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.003 19 6.3 0.1 20 46 172 198 168 200 0.90 2 4 3.9e-05 0.25 12.3 0.0 21 52 201 232 198 233 0.89 3 4 0.043 2.8e+02 2.6 0.1 21 48 229 256 227 260 0.85 4 4 0.00012 0.76 10.8 0.1 21 47 257 283 253 290 0.88
Sequence Information
- Coding Sequence
- ATGATGCATATCAAGAATCTGCCGCATACGcatgcagcagctgctgccatgaGTAGCAATTGCGATATTGTCATCGTTGCCGCCCAACCGCAGACCACcaatgccaacaataacaacaacgatacAGTTACCCAGGCCACACACCCCGGTCACAGTCATGTGGCCCAGGCGCAGCAgcatgcccagcagcagcagcagcagcagcaacacaatcAACAACAGCCGCCTGGTTCGGCTCCACCCACAGAAATAGCCTTACCCTTCAATATGCATCTCAGCGGTATAACGGCAGAGGCGCATAGTGCCGCCCAAGAGGCTGCCATGGCAGCTGCGCGGGCTGCTGCCGCtcaggctgcagctgcagagcaacagcagccgccgtCGTCTCATGGCTTAAGCCATATGCCAACCGCCACTCATAGTCCCACTCTGGGTGATCACTACGTGTCCAATGGGCATGGTGAGCATGCAAACGAAAGTGTCGACGGCTCcagcggcggtggtggcggtcGCGAGTCGGAGAAACCGTTCCATTGCACTGTGTGCGACAGGCGTTTCCGACAGCTGAGCACGCTGACCAACCATGTCAAGATCCATACCGGCGAGAAGCCCTACAAATGCAACGTTTGTGATAAGACGTTCCGTCAATCGTCGACGCTGACGAACCATCTGAAGATTCACACTGGCGAAAAGCCCTACAATTGCAACTATTGTCCCAAGCATTTCCGCCAGCTGAGTACTTTGGCGAATCATGTCAAGATTCATACAGGCGAAAAACCCTTCGAGTGCGTCATTTGCAAGAAGCAGTTCCGTCAATCCAGCACACTCAACAACCACATAAAGATCCATGTCATGGACAAGGTCTACGTTCCTGTTAAGATCAAAACGGAGGAAGAGGAAGGGTGA
- Protein Sequence
- MMHIKNLPHTHAAAAAMSSNCDIVIVAAQPQTTNANNNNNDTVTQATHPGHSHVAQAQQHAQQQQQQQQHNQQQPPGSAPPTEIALPFNMHLSGITAEAHSAAQEAAMAAARAAAAQAAAAEQQQPPSSHGLSHMPTATHSPTLGDHYVSNGHGEHANESVDGSSGGGGGRESEKPFHCTVCDRRFRQLSTLTNHVKIHTGEKPYKCNVCDKTFRQSSTLTNHLKIHTGEKPYNCNYCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00359675;
- 90% Identity
- iTF_00359675;
- 80% Identity
- iTF_00359675;