Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991970.1:8801169-8808615[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.8 1.4e+02 3.6 0.1 3 23 116 136 114 136 0.94

2 19 0.0023 0.18 12.7 0.0 2 23 140 162 139 162 0.96

3 19 0.27 21 6.2 0.1 3 23 434 455 432 455 0.94

4 19 0.011 0.84 10.6 0.1 1 20 463 482 463 484 0.96

5 19 0.0044 0.35 11.8 0.8 2 23 494 515 493 515 0.95

6 19 1.5 1.2e+02 3.8 0.4 1 23 531 554 531 554 0.77

7 19 0.00037 0.029 15.2 1.7 1 23 563 586 563 586 0.96

8 19 2.2 1.7e+02 3.3 0.1 10 23 640 654 637 654 0.89

9 19 0.2 16 6.6 1.7 2 22 665 685 664 687 0.82

10 19 3.7 2.9e+02 2.6 1.0 1 23 693 716 693 716 0.89

11 19 5e-05 0.0039 18.0 1.8 1 23 722 744 722 744 0.96

12 19 2.6e-06 0.0002 22.0 0.6 1 23 751 773 751 773 0.98

13 19 8.4e-05 0.0066 17.2 2.3 1 23 778 800 778 800 0.96

14 19 0.00022 0.017 15.9 2.9 1 23 806 828 806 828 0.98

15 19 1.6e-06 0.00013 22.7 1.3 1 23 834 856 834 856 0.98

16 19 0.00021 0.016 16.0 3.5 2 23 863 884 863 884 0.98

17 19 0.00036 0.028 15.3 0.8 2 23 892 914 891 914 0.97

18 19 3.1e-06 0.00024 21.8 1.2 1 23 919 941 919 941 0.98

19 19 0.13 9.9 7.2 4.1 1 23 947 970 947 970 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.8	1.4e+02	3.6	0.1	3	23	116	136	114	136	0.94
2	19	0.0023	0.18	12.7	0.0	2	23	140	162	139	162	0.96
3	19	0.27	21	6.2	0.1	3	23	434	455	432	455	0.94
4	19	0.011	0.84	10.6	0.1	1	20	463	482	463	484	0.96
5	19	0.0044	0.35	11.8	0.8	2	23	494	515	493	515	0.95
6	19	1.5	1.2e+02	3.8	0.4	1	23	531	554	531	554	0.77
7	19	0.00037	0.029	15.2	1.7	1	23	563	586	563	586	0.96
8	19	2.2	1.7e+02	3.3	0.1	10	23	640	654	637	654	0.89
9	19	0.2	16	6.6	1.7	2	22	665	685	664	687	0.82
10	19	3.7	2.9e+02	2.6	1.0	1	23	693	716	693	716	0.89
11	19	5e-05	0.0039	18.0	1.8	1	23	722	744	722	744	0.96
12	19	2.6e-06	0.0002	22.0	0.6	1	23	751	773	751	773	0.98
13	19	8.4e-05	0.0066	17.2	2.3	1	23	778	800	778	800	0.96
14	19	0.00022	0.017	15.9	2.9	1	23	806	828	806	828	0.98
15	19	1.6e-06	0.00013	22.7	1.3	1	23	834	856	834	856	0.98
16	19	0.00021	0.016	16.0	3.5	2	23	863	884	863	884	0.98
17	19	0.00036	0.028	15.3	0.8	2	23	892	914	891	914	0.97
18	19	3.1e-06	0.00024	21.8	1.2	1	23	919	941	919	941	0.98
19	19	0.13	9.9	7.2	4.1	1	23	947	970	947	970	0.97

Sequence Information

Coding Sequence: ATGGGTTCCGATGAATCTGACGATGAGCCGCTATCGTTATTAGCAGCAGCAAAGAAAATAAATCCTCAAGACTTTCCGGTGGATATCAAAATTCACGAAAAAAAACCCAAGAAGGAAAAAATTACACCGCTTAAGAAATATGGTGTTACAATTAAACTGAATCGTACAAATTCTACGTCGAATGCTTTGGTATCCCAAGCCCTTATCAAACGTCCGACCGATGTCTGGCTATATCTGAAGGATTTCAATACGACAGGCCCATACAGTTGTTTACTATGTCCTGATTGGTTCATAAACAGACCTAAAATTATAATTCATTATGTATTAAATCACAAAAAAGATTTTTGCGGGATATGCAGATACTTTGTTCCTGATAGAGAAGCGTGGAAAGCACATGAAAAATTCCACACGCCTTGGCCTTGTTCTCAATGCGTGGAATCTTTCCCTGTGGAAGATTTGCTAAGAAATCACTTAAAAACTGTACACAACCTTGTCCATTGCCGTCTATGTCACTTTAGAGTGCCAGCTGATGACAATTATACTACCCATTTGTATCAAAAGCATAATGTCACAAATATTTCATGTATATTCGGAGATTTGTGGCAACTCGACTCACAATGCAAGTTCCTATGTCTCCTATGTTCTAAATCAGATAATACAGCATCAACTTTCTTCAGTCATTACATGGGGTACCATCATTTCACATTAAAATGCTTCTCCAATATGGTTTCTGGGAAGGATCCACCGTTTTTTGTTAAAGGTGTTGATGTCAGTCCGCAGTTTATTCATGAGGAATTAAGAAGTCAAATGAGATGTGGATATGTTGGAATGCAGAAGCCGTTTGCAATCCAAGATTATTCCAACCAAACTGATGGAATGTTTAACCAAAATGAACCAAATATTGATTTAAGTGTTATACCGGAAGTCAAACAAGAAGTCCATTCTGATGATGAACAAGTCAAAAGTAATAATGATAATATAAATGAAGAAACAAAAGAAAATGAAGTGAAAGATGGTGAAATAAGAAATGATAATTCAAAAGATGATGAGGGAAAAGATGAAGATATGAAGACAGAAAATGATGAAGCATGTGATGGCAGTAAAAATGACAGTATAAGTGAAGAAATTATAGATTATCAAGGTGAAGAGGACTTTGATATGACTCTACTAGAATTAGTTATCTTGGAAAAGTGCTATTTCAACTACATAGATAAAATGTTAAAAGATATAGATGTAAAAACAGTACCAGAGAACTCAGATGTTGATTATAATACTAAATCTGAGGCGAAAGAAATAGACTGTACAATATGTAAAACAAAATTAGATGATTTAAATTCATTAGCAGTTCATGTATCTAAAATGCATTGCATGAAAACTGTATCATTGTACTCATGTAGAGTGTGTGCTACGACTTTCGAAACTTATAATGAACTTAGAAATCATATTACTGCAGAATTGGGTCAATTTGAAGATCTCTGGATATGTCAGTTTTGCGATAAGGAATTTGATAATAGAGAATCTACAAGGAAACATCTTTCCTTACATTGGGATGAATTAGAATATGAGAATTGTTTCAGCCCCCATCTTGGTTTTAAGTGTAAATATTGTCCAACTTTATTCTGGAACGAACCAGACAGAGAATTGCATCAGATAAAAGTACATTTGGAAAAATATAAAGATGAGTTTTATAAGTGTGAAGATTGTTCTAAAATTTTTGGTGATAAGGTTTGGTTCACACATCACTACATGCAGGAACATATCAATGAAAGAACACAGATGAACATATTATATTTGTTGAAATGCTGTGTTTGTTGCATCTTATTACCATCTCTTGAGGAAATTCGCACCCATTTTGACGAAAACCATCCGGAAGCAAGGAAGCTGTATTGCTGTTTAGATCCTTGTTTGTATAGGCCATTGAGTCAGAAAAAATCTTTGAAGGTGCATGTTAAGACAGTCCACGCGGCCCGTTCGTCAAAACCGAAGGCGGTCAGCTGCCACGTGTGTGGGCGCGAGTTTGCGACCGCGCGCTCGTGCAGCACGCACGTGACGCAGGCGCACGGAGCCGTCGGCAAGTTCAAGTGCAAGCTGTGCAGGGAGGTGCTGCAGACTATGGACGAGAGAAAACTGCACTACCTGCTCCGTCATCCAGGAAGACATCCGTTCGAATGCTCAGAGTGTGGAAAGTCATTTCAATACAAATCATCACTGTACATGCACAAACAAGACCACCTGCCGAATAGACAGAGCTTTACGTGTGACTATTGTGGGAAAGTGTTTGCGAAGAAGGACTCGTACCGCGAGCACGTGCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGGCGCCACACGGGCGAGCGGCCCTACGCCTGCCCGCACTGCGACCGCACCTTCGCCGACAAGGGCGCGTGCACGTCGCACACTAGGACGCATTCTAAGGACACGTCGTACGCTTGCCTTTATTGTGGACAGACTTTCGTGCAGAAATCCAAACTTACGTACCATATAAGAAGACATACAGGAGAAAATTTGGAAACGTGTACAATATGCAGTAAATTATTCACAAGCGCATGTTCGCTGCGGGAACATATGAAAACGCACATAGCCAAATCAGAGAATGTGAAATGTCCACTTTGCGATAAAAAGTACCAAGACGAACGTTACATGTTACGTCACTTGCGCACGTCGCACACGAACACACAGTTCACGTGTCCGATTTGCCAGAAGACGGTCACAAGCAGTTCCGGGTTGCGGCATCATGTCATGACGCATAGCACTATGAATATATTTAGATGCAAATGCTGTCCAAAATCGTACGCAGTCAAGCGAACAATAATTAAACATCTACGCAAACGCCACGATCTCAACGGAGCAGCAATCAACATAAAGGACTATTATTCGCGATTAGAACCAAGAGAATGCAATTTGAACTTAGATGAGCAAACCATGACAAGTATTTTTGGACCGCCCAAGAAAAAAGTCACAGATTTACTTATAGGCGACTTCGTGACATTGGCAAATAAACTACAATTGGATAAAAAAGACGAAAATAACGAAAGTACAGGAGAATCTGATGATAATGATGAACATTCTGATGATGAAACACAAGATAATTCAACGGAACAATCTGAATCTCAGAGCGATATACATCCAAAGTTCACAGAAGTCGTTTGTAAACAAGAGGTAGATAATAATGAATATGAGTTGGAACCAACTGATTTTGTGAGCGTTAAAATTGAACCTATGGAAGAAGAGGAAAATAATATTGAATAG
Protein Sequence: MGSDESDDEPLSLLAAAKKINPQDFPVDIKIHEKKPKKEKITPLKKYGVTIKLNRTNSTSNALVSQALIKRPTDVWLYLKDFNTTGPYSCLLCPDWFINRPKIIIHYVLNHKKDFCGICRYFVPDREAWKAHEKFHTPWPCSQCVESFPVEDLLRNHLKTVHNLVHCRLCHFRVPADDNYTTHLYQKHNVTNISCIFGDLWQLDSQCKFLCLLCSKSDNTASTFFSHYMGYHHFTLKCFSNMVSGKDPPFFVKGVDVSPQFIHEELRSQMRCGYVGMQKPFAIQDYSNQTDGMFNQNEPNIDLSVIPEVKQEVHSDDEQVKSNNDNINEETKENEVKDGEIRNDNSKDDEGKDEDMKTENDEACDGSKNDSISEEIIDYQGEEDFDMTLLELVILEKCYFNYIDKMLKDIDVKTVPENSDVDYNTKSEAKEIDCTICKTKLDDLNSLAVHVSKMHCMKTVSLYSCRVCATTFETYNELRNHITAELGQFEDLWICQFCDKEFDNRESTRKHLSLHWDELEYENCFSPHLGFKCKYCPTLFWNEPDRELHQIKVHLEKYKDEFYKCEDCSKIFGDKVWFTHHYMQEHINERTQMNILYLLKCCVCCILLPSLEEIRTHFDENHPEARKLYCCLDPCLYRPLSQKKSLKVHVKTVHAARSSKPKAVSCHVCGREFATARSCSTHVTQAHGAVGKFKCKLCREVLQTMDERKLHYLLRHPGRHPFECSECGKSFQYKSSLYMHKQDHLPNRQSFTCDYCGKVFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCDRTFADKGACTSHTRTHSKDTSYACLYCGQTFVQKSKLTYHIRRHTGENLETCTICSKLFTSACSLREHMKTHIAKSENVKCPLCDKKYQDERYMLRHLRTSHTNTQFTCPICQKTVTSSSGLRHHVMTHSTMNIFRCKCCPKSYAVKRTIIKHLRKRHDLNGAAINIKDYYSRLEPRECNLNLDEQTMTSIFGPPKKKVTDLLIGDFVTLANKLQLDKKDENNESTGESDDNDEHSDDETQDNSTEQSESQSDIHPKFTEVVCKQEVDNNEYELEPTDFVSVKIEPMEEEENNIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00357874;
90% Identity: iTF_01562182; iTF_00357874;
80% Identity: -