Basic Information

Insect: Colias behrii
Gene Symbol: -
Assembly: GCA_029959075.1
Location: JARWMB010000012.1:10501919-10510099[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.1 2e+02 3.6 0.1 3 23 116 136 114 136 0.94

2 19 0.0027 0.26 12.7 0.0 2 23 140 162 139 162 0.96

3 19 0.1 9.6 7.8 0.1 3 23 431 452 429 452 0.95

4 19 0.013 1.2 10.6 0.1 1 20 460 479 460 481 0.96

5 19 0.0053 0.51 11.8 0.8 2 23 491 512 490 512 0.95

6 19 2.3 2.2e+02 3.5 0.7 1 23 528 551 528 555 0.80

7 19 0.00018 0.017 16.4 2.4 1 23 560 583 560 583 0.96

8 19 2.6 2.5e+02 3.3 0.1 10 23 636 650 633 650 0.89

9 19 0.25 24 6.6 1.7 2 22 661 681 660 683 0.82

10 19 4.5 4.3e+02 2.6 1.0 1 23 689 712 689 712 0.89

11 19 1.5e-05 0.0014 19.9 1.1 1 23 718 740 718 740 0.96

12 19 3.1e-06 0.0003 22.0 0.6 1 23 747 769 747 769 0.98

13 19 0.0001 0.0096 17.2 2.3 1 23 774 796 774 796 0.96

14 19 0.00026 0.025 15.9 2.9 1 23 802 824 802 824 0.98

15 19 1.9e-06 0.00018 22.7 1.3 1 23 830 852 830 852 0.98

16 19 0.00025 0.024 16.0 3.5 2 23 859 880 859 880 0.98

17 19 0.00043 0.041 15.3 0.8 2 23 888 910 887 910 0.97

18 19 3.7e-06 0.00035 21.8 1.2 1 23 915 937 915 937 0.98

19 19 0.15 14 7.3 4.1 1 23 943 966 943 966 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.1	2e+02	3.6	0.1	3	23	116	136	114	136	0.94
2	19	0.0027	0.26	12.7	0.0	2	23	140	162	139	162	0.96
3	19	0.1	9.6	7.8	0.1	3	23	431	452	429	452	0.95
4	19	0.013	1.2	10.6	0.1	1	20	460	479	460	481	0.96
5	19	0.0053	0.51	11.8	0.8	2	23	491	512	490	512	0.95
6	19	2.3	2.2e+02	3.5	0.7	1	23	528	551	528	555	0.80
7	19	0.00018	0.017	16.4	2.4	1	23	560	583	560	583	0.96
8	19	2.6	2.5e+02	3.3	0.1	10	23	636	650	633	650	0.89
9	19	0.25	24	6.6	1.7	2	22	661	681	660	683	0.82
10	19	4.5	4.3e+02	2.6	1.0	1	23	689	712	689	712	0.89
11	19	1.5e-05	0.0014	19.9	1.1	1	23	718	740	718	740	0.96
12	19	3.1e-06	0.0003	22.0	0.6	1	23	747	769	747	769	0.98
13	19	0.0001	0.0096	17.2	2.3	1	23	774	796	774	796	0.96
14	19	0.00026	0.025	15.9	2.9	1	23	802	824	802	824	0.98
15	19	1.9e-06	0.00018	22.7	1.3	1	23	830	852	830	852	0.98
16	19	0.00025	0.024	16.0	3.5	2	23	859	880	859	880	0.98
17	19	0.00043	0.041	15.3	0.8	2	23	888	910	887	910	0.97
18	19	3.7e-06	0.00035	21.8	1.2	1	23	915	937	915	937	0.98
19	19	0.15	14	7.3	4.1	1	23	943	966	943	966	0.97

Sequence Information

Coding Sequence: atGGGTTCCGTTGAATCTGACGATGAGCCGCTATCGTTATTAGCAGCAGCAAAGAAAATAAATCCCCAAGTCTTTCCGGTGGATATCAAAATTCACGAAAAAAAACCCaagaagaaaaaaattataccgaTTAAGAAATATGGTGTTACAATAAAACTGAATCGTACAAATTCTACGTCGAATGCTTTGGTATCCCAAGCCCTTATCAAACGTCCGACCGATGTCTGGCTATATCTGAAGGATTTCAATACGACAGGCCCATACAGTTGTTTACTATGTCCTGATTGGTTCATAAACAGACCTAAAATTATAATTCACTATGTTTTAAATCACAAAAAAGATTTTTGCGGCATATGCAGATACTTTGTTCCCGATAGAGAAGCATGGAAAGCACATGAAAAATTCCACACACCTTGGCCATGTTCTCAATGCGTGGAATCTTTCCCTGTGGAAGATTTGTTGAGAAATCACTTAAAAACTGTACACAACCTTGTCCATTGCCGTCTATGTCACTTTAGAGTGCCAGCTGATGACAATTATACTACCCATTTGTATCAAAAGCATAATGTCACAAATATTTCATGTATATTCGGAGAATTGTGGCAACTCGACTCACAATGCAAGTTCCTATGCCTCCTATGTTCTAAAACAGATAATCCAGCATCAACCTTCTTCAGTCATTACATGGGGTACCATCATTTCACATTAAAATGCTTCTCCAATATGGTTTCTGGAAAGGATCCACCGTTTTTTGTTAAAGGTGTTGATGTCAGTCCGCAGTTTATTCATGAGGAATTAAGAAGTCAAATGAGATGTGGATATGTTGGAATGCAGAAGCCGTTTGCAATACAAGATTATTCCAACCAAACTGATGGAATGTTTAACCAAAATGAACCAAATATTGACATAAGTGTTGTACCAGAAGTAAAACAAGAAGTCCATTCTGATGATGAACAAGTCAAGAGTAATAATGGTAGTAAAAGTGAGGAAACAAAAGAAAATGAAGTGAAAGGTGGTGAAATAAGAAATGATGATTTAAAAGATGATGAGGGAAAAGATGAAGATATGAAGACTGAAAATGATGAAGCAGTAATAGAAGACAGTATAAGTGAAGAAATTATAGATTATCAAGGTGAAGAGGACTTTGATATGACTCTACTAGAATTAGTTATATTGGAAAAGTGCTATTTCAACTACATAGATAAAATGTTAAAAGATATAGATATAAAAACAGTACCAGAGAACTCTGATGTTGATTATAATACTAAATCTGAGGCGAAAGAAATAGACTGTACAAtatgtaaaacaaaattatatgaTCCAAATTCGTTAGCAGTTCACGTATCTAAAATGCATTGCATGAAAACTGTATCATTGTACTCATGTAGAGTGTGTGCTACGACTTTCGAAACTTATAATGAACTTAGAAATCATATAACGGCAGAATTGGGTCAATTTGAAGATCTCTGGATATGCCAGTTTTGCGATAAGGAATTTGATAATCGAGAATCTACAAGGAAACATCTTTCCTTACATTGGGATGAATTAGAATATGAGAATTGTTTCAGCCCCCATCTTGGTTTTAAGTGTAAATATTGTCCAACTTTATTCTGGAACGAACCAGACAGAGAATTACATCAGATAAAAGTACATTTGGAAAAACATAAAGATGAGTTTTATAAGTGTGAAGATTGTTCTAAGACTTTTGGCGATAAGGTTTGGTTCACACATCACTACATGCAGGAACATATCAATGAAAGAACACAGATGAACATATATTTGTTGAAATGTTGTGTTTGTTGCATCTTGTTACCGTCTCTTGAAGAAATACGCACCCACTTTGATGAGAACCATCCGGAAGCAAGGAAGCTGTATTGCTGTTTAGATCCTTGTGTGTACAGGCCATTGAGTCAGAAAAAATCTTTGAAGGTGCATGTTAAGACGGTCCACGCGGTTCGTTCATCAAAACCGAAGGCGGTCAGCTGCCACGTGTGCGGGCGCGAGTTTGCGACCGCGCGCTCGTGCAGCACGCACGTGACGCAGGCGCACGGAGCCGTCGGCAAGTTCAAGTGCAAGCTGTGCAGGGAGGTGCTGCAGACTATGGACGAGAGAAAACTGCACTACCTGCTCCGTCATCCAGGAAGACATCCGTTCGAATGCCCTGAGTGTGGGAAGTCATTTCAATACAAATCATCACTGTACATGCACAAACAAGACCATCTGCCTAATAGACAGAGCTTTACGTGTGACTATTGTGGGAAAGTGTTTGCGAAGAAGGACTCGTACCGCGAGCACGTGCAGATCCACGAGGGCCCGCGGCACGCGTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGGCGCCACACGGGCGAGCGGCCCTACGCCTGCCCGCACTGCGACCGCACCTTCGCCGACAAGGGCGCGTGCACGTCGCACACTAGGACGCATTCCAAGGACACGTCGTACGCTTGCCTATACTGTGGACAGACTTTCGTGCAAAAGTCCAAACTTACCTACCATATAAGAAGACATACAGGAGAAAATTTGGAAACGTGTACAATATGCAGTAAATTATTCACAAGCGCATGTTCGCTGCGGGAACATATGAAAACGCACATAGCCAAATCGGAGAATGTGAAATGTCCACTTTGCGataaaAAGTACCAAGACGAGCGTTACATGTTACGTCACTTGCGCACGTCGCACACGAACACACAGTTCACGTGTCCGATATGTCAGAAGACGGTCACAAGCAGTTCTGGATTGCGGCATCATGTTATGACGCATAGCACTATTAATATATTTAGATGCAAATGCTGTCCAAAATCATATGCAGTCAAGCGAACAATAATTAAACATCTACGCAAACGCCACGATCTCAACGGAGCAGCAATCAACATAAAGGACTATTATTCGCGATTAGAACCAAGAGAATGCAATTTGAATTTAGACGAGCAAACCATGACAAACATTTTCGGACCGCCCAAGAAAAAAGTCACAGATTTACTTATAGGCGACTTCGTAACATTGGCAAATAAACTacaattggataaaaataatgaaagtaCTGGAGAATCGGATGATAATGAGGAACATTCTGATGATGAAACACAAGATAATTCAACGGAACAATCTGAATCTCAGAACAATATGGATATACATCCAAAGTTCACAGAAGTCGTTTGTAAACAAGAGGTTGAAAATAATGAATATGAGTTGGAACCAACTGATTTTGTGAGCGTTAAAATTGAACCTATGGAAGAAGAGGAAAATAATATAGAATAG
Protein Sequence: MGSVESDDEPLSLLAAAKKINPQVFPVDIKIHEKKPKKKKIIPIKKYGVTIKLNRTNSTSNALVSQALIKRPTDVWLYLKDFNTTGPYSCLLCPDWFINRPKIIIHYVLNHKKDFCGICRYFVPDREAWKAHEKFHTPWPCSQCVESFPVEDLLRNHLKTVHNLVHCRLCHFRVPADDNYTTHLYQKHNVTNISCIFGELWQLDSQCKFLCLLCSKTDNPASTFFSHYMGYHHFTLKCFSNMVSGKDPPFFVKGVDVSPQFIHEELRSQMRCGYVGMQKPFAIQDYSNQTDGMFNQNEPNIDISVVPEVKQEVHSDDEQVKSNNGSKSEETKENEVKGGEIRNDDLKDDEGKDEDMKTENDEAVIEDSISEEIIDYQGEEDFDMTLLELVILEKCYFNYIDKMLKDIDIKTVPENSDVDYNTKSEAKEIDCTICKTKLYDPNSLAVHVSKMHCMKTVSLYSCRVCATTFETYNELRNHITAELGQFEDLWICQFCDKEFDNRESTRKHLSLHWDELEYENCFSPHLGFKCKYCPTLFWNEPDRELHQIKVHLEKHKDEFYKCEDCSKTFGDKVWFTHHYMQEHINERTQMNIYLLKCCVCCILLPSLEEIRTHFDENHPEARKLYCCLDPCVYRPLSQKKSLKVHVKTVHAVRSSKPKAVSCHVCGREFATARSCSTHVTQAHGAVGKFKCKLCREVLQTMDERKLHYLLRHPGRHPFECPECGKSFQYKSSLYMHKQDHLPNRQSFTCDYCGKVFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCDRTFADKGACTSHTRTHSKDTSYACLYCGQTFVQKSKLTYHIRRHTGENLETCTICSKLFTSACSLREHMKTHIAKSENVKCPLCDKKYQDERYMLRHLRTSHTNTQFTCPICQKTVTSSSGLRHHVMTHSTINIFRCKCCPKSYAVKRTIIKHLRKRHDLNGAAINIKDYYSRLEPRECNLNLDEQTMTNIFGPPKKKVTDLLIGDFVTLANKLQLDKNNESTGESDDNEEHSDDETQDNSTEQSESQNNMDIHPKFTEVVCKQEVENNEYELEPTDFVSVKIEPMEEEENNIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358849; iTF_01562182;
90% Identity: iTF_00358849;
80% Identity: -