Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991981.1:4173858-4177608[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.064 5 8.2 0.3 1 23 45 68 45 68 0.92

2 25 0.18 14 6.8 0.3 2 23 92 114 91 114 0.95

3 25 0.15 12 7.0 1.8 2 23 137 158 136 158 0.96

4 25 0.00011 0.009 16.8 1.5 1 23 162 184 162 184 0.99

5 25 0.015 1.2 10.2 0.4 1 23 224 247 224 247 0.92

6 25 0.00023 0.018 15.9 2.7 1 23 253 275 253 275 0.98

7 25 0.00028 0.022 15.6 1.3 1 23 301 324 301 324 0.96

8 25 2.1 1.7e+02 3.4 0.1 2 23 435 457 434 457 0.92

9 25 0.0037 0.29 12.1 0.9 2 23 480 501 479 501 0.97

10 25 0.021 1.7 9.7 1.8 1 23 505 527 505 527 0.98

11 25 0.036 2.8 9.0 1.5 1 23 532 555 532 555 0.97

12 25 0.28 22 6.2 3.0 2 23 563 585 562 585 0.91

13 25 0.0059 0.47 11.4 0.9 2 23 593 615 592 615 0.96

14 25 0.00014 0.011 16.5 1.8 3 23 623 643 622 643 0.99

15 25 7 5.5e+02 1.7 0.1 1 9 649 657 649 659 0.87

16 25 0.003 0.24 12.3 1.1 1 23 721 744 721 744 0.94

17 25 6.7 5.3e+02 1.8 0.0 2 23 771 793 770 793 0.90

18 25 1.7 1.3e+02 3.7 3.0 2 23 816 837 815 837 0.96

19 25 0.0032 0.25 12.2 0.2 1 23 841 863 841 863 0.96

20 25 0.21 17 6.5 1.4 1 19 868 886 868 888 0.89

21 25 0.035 2.8 9.0 0.8 2 23 898 920 898 920 0.92

22 25 0.00036 0.028 15.2 1.7 2 23 928 950 927 950 0.96

23 25 0.00038 0.03 15.2 0.5 1 23 956 978 956 978 0.96

24 25 4.8e-05 0.0038 18.0 1.9 1 23 984 1006 984 1006 0.98

25 25 0.00018 0.014 16.2 3.4 1 23 1012 1035 1012 1035 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.064	5	8.2	0.3	1	23	45	68	45	68	0.92
2	25	0.18	14	6.8	0.3	2	23	92	114	91	114	0.95
3	25	0.15	12	7.0	1.8	2	23	137	158	136	158	0.96
4	25	0.00011	0.009	16.8	1.5	1	23	162	184	162	184	0.99
5	25	0.015	1.2	10.2	0.4	1	23	224	247	224	247	0.92
6	25	0.00023	0.018	15.9	2.7	1	23	253	275	253	275	0.98
7	25	0.00028	0.022	15.6	1.3	1	23	301	324	301	324	0.96
8	25	2.1	1.7e+02	3.4	0.1	2	23	435	457	434	457	0.92
9	25	0.0037	0.29	12.1	0.9	2	23	480	501	479	501	0.97
10	25	0.021	1.7	9.7	1.8	1	23	505	527	505	527	0.98
11	25	0.036	2.8	9.0	1.5	1	23	532	555	532	555	0.97
12	25	0.28	22	6.2	3.0	2	23	563	585	562	585	0.91
13	25	0.0059	0.47	11.4	0.9	2	23	593	615	592	615	0.96
14	25	0.00014	0.011	16.5	1.8	3	23	623	643	622	643	0.99
15	25	7	5.5e+02	1.7	0.1	1	9	649	657	649	659	0.87
16	25	0.003	0.24	12.3	1.1	1	23	721	744	721	744	0.94
17	25	6.7	5.3e+02	1.8	0.0	2	23	771	793	770	793	0.90
18	25	1.7	1.3e+02	3.7	3.0	2	23	816	837	815	837	0.96
19	25	0.0032	0.25	12.2	0.2	1	23	841	863	841	863	0.96
20	25	0.21	17	6.5	1.4	1	19	868	886	868	888	0.89
21	25	0.035	2.8	9.0	0.8	2	23	898	920	898	920	0.92
22	25	0.00036	0.028	15.2	1.7	2	23	928	950	927	950	0.96
23	25	0.00038	0.03	15.2	0.5	1	23	956	978	956	978	0.96
24	25	4.8e-05	0.0038	18.0	1.9	1	23	984	1006	984	1006	0.98
25	25	0.00018	0.014	16.2	3.4	1	23	1012	1035	1012	1035	0.97

Sequence Information

Coding Sequence: ATGAGTCAAGTTGAAGTGAATCGAATAGAAAGAGCAAAACAAGTTGACTTTAGAGAAAAGCACCAATCTAATGTTCGAAATGTTTTGATGTATTCGAACGGCACGATGTTTAGAAGCTTTGATGATAAAGGATACAAATGCGGTTTCTGCCCGGACCAATACACCACACCAGCTGATTTGAAAGAACACTCCTTAAATTCACATACAGGAAATTGTCTTGTAGATATGAAAGTGCTGCGCCCTTACACTGTTAAATTAGATATCACAGATCTTAAATGCACTATTTGTAATTCAAATACACCGACGCTGCAAGACCTGCTAGATCATTTACAAAATAGTCACGATAAAGTTATATACGAGGATATTGAAAACCACTTGGTGTCCTATAAATTTGATGACGATAAGTTAAGATGTGTGTTTTGCAAGGAGGAGTTTCGTAGATTCCCAACGTTGCAGTTTCATATGAATAAGCATTATCGGAATTATGAATGTGATGTGTGCCACGCTGGTTTCATGAACAACAATAATTTAAGAGTGCACAAAAGAAAACATAAAAGACAAAACTTACGTAATAAGATTGGTAAAAGTAAAGACATGGAGAATGAAGATCATTGTGCTGAAATTAAAGAAATAGAAGATCGAAATGAAACCTTAACGGAAAATAAACTCCATATATGTAGCAAATGCGATGTGTATTTCGAAAATGAAGAGTTGCTCCAAAATCATGCGCTAAACGAACACTTGCTTAAAAGGGAATATAACTGCAAATATTGTGATATGACATTTTTAACAGCAGATGAACTAAAACATCATCAGCAAAGTCATAGAGAATGTCTTAGTTTGTTTAAAGATGATAAAACTTTACATGATCATTTGATGATCGATGCCAATGGCATTGGTTTTAAATGCACAGAATGTGATTTGTCATTTGTACATGAAAAAGAGATGAGAGAACATATACAAGGGAAGCATGGTACCCCGGAAACTGACAAAAAAGTCGATACCAAAAAGAAAATAAATAATAAAGTTAAATCTGGTGATGTTGCCGGTGAGAAAATGGGGCGGTCTGCATTACAAATTAAATTTCGTGAAAATGTACTTGAAGTATTGTATAATTCTAATGCATCGACTATCAGAAATTGTGTTGACTACAGATACACATGTTGTTTTTGCTCTGACTGTTACGAACGTCCGGAGGATTTGAAAAATCACAACTTAGAGTGTCACGATAAGTCCACCTTAAAGAATGCAATGAGGGCAAAACACATGAACACAACTCTGAAACTGGATATAACTGGTCTACGATGTACCCTCTGTGATACTGAGATGGACATGTTAGATGATTTATTGAACCACCTTAAAGATATACACAACAGACAAATTCACACCGATATTGATAATTACATGGTTCCTCTTAAGTTCGAAGACGACGTCTTACGTTGCACATTTTGTCGAGAGGAATTTGTCCAATTCAGACTACTAATGACACACATAAAAGTACACTATAGAAATTTTGTATGCGAAGTGTGTGACCATGGGTTTATAAGTAAGAATATTTATCGATCTCACCGCAGGAGCCATGACATTGGCAATTACAAATGCGACTACTGTGAAAGAGTTTTGGATACTAGAACCAAAAAATTGAAGCACGAGAGGGTGACACATAGACGATTGAAGAATGTGAATAAGTGCCAGTATTGCCATCAAACGTTCAACGAATATAATAAGAAGCAAAAGCATTTAGCGGAAGTCCACGGGGTGAAACTGCCCGGCTTGCAGTGCAAGGCTTGCGATCGCACGTTCCCAAATCGGAACAGATACACGATTCATGTAAAGAGGGATCATCTAATGGAACGGAGACACGGTTGTACAGTGTGCGACATGAAATTTTTCACGTCCTACGAATTGAAGCATCACATGATCAGCCATTCTGGTGTGAAGAAGTATCAATGTGATATTTGTTCTCGACGTAGCATCATAACTGAAACAACAGATGTTAAATCAGGACAATCAGGTGAACTGAATGACGAATTAGCTCAAATTGGAGACACGAATGTTATAAAGAAAAAAGGTGAAGAATTGGCAAAACATAAAATTAATTTGGTGGCGATACTTAAAAATTCCTCCGCGACTCCGATCCGATGTCGAGGCGGAATAGGTTATGCGTGCTGTTATTGCGCACAAGAATTCCCAGATCCTAAGGATTTGAAGAAACACACACTGCAAATGCATGAAGAGAAAACGAGACTACGGTTAATGGAAGGGAAAGATATCTATAAATTTCACGCAAAGCTCGATATAACCGACCTAAAATGCAGTATTTGTGCTAGTGATATTGACGATCTGGAAAAACTTATTGAACATCTCAGAAACGTTCATAACGTCACAATGCACATGGATGTGAAAAATCAACTGGTACCCTTCAAGTTTGGTAGCGAAGGACTGAAATGTTTTATATGCTTCAGCATGTATCATAAATTTAAATCGCTTCTAGAGCATATGAACGTACATTATAGAAATTATATATGTGACGTGTGCAACGCTGGATTCGTGAACCGTTGTATGCTCGCTCGGCATGCGGAAAGCCACAGGCTCGGATCGTTCAAATGTATGTTCTGTCCGAAGGTATTTGACACGCTCAGGAAGAAACGGTCGCACGAAAAGTGCGTGCACACACATTCGATACTCAACAGATGTGGCTATTGCAACGAGAAATTTAGGGACTATAGGAAAAAAGAGAAACATCTCATAGCAGTTCACGGTGCGGTCAATGTAGAGACGAAGTGCCAAGCCTGTGATAGGTCATTCACGAATCAAAAGGAGTACAATTCCCACGTGAAGAGGCTACATTTGATGGACAAGCGACACAAATGCCCAGAGTGCGATATGGCCTTTTTTACCACTGGAGAGCTGAGAGATCATGTTGTGAAACACACGGGTACAAGGCAGTTTGAGTGTGAGGTGTGTCATAAGACGTATGGAAGGAGGAAGACTCTATTGGAACATTTGAGGATACATAAGGATGATCGACGGTTTAAGTGCGAGCATTGTGGGCAGGCGTTTGTGCAGAAGTGCAGTTGGCGGGGACATATGCGAGCAAAGCATGGGGAAAAGGTCTAG
Protein Sequence: MSQVEVNRIERAKQVDFREKHQSNVRNVLMYSNGTMFRSFDDKGYKCGFCPDQYTTPADLKEHSLNSHTGNCLVDMKVLRPYTVKLDITDLKCTICNSNTPTLQDLLDHLQNSHDKVIYEDIENHLVSYKFDDDKLRCVFCKEEFRRFPTLQFHMNKHYRNYECDVCHAGFMNNNNLRVHKRKHKRQNLRNKIGKSKDMENEDHCAEIKEIEDRNETLTENKLHICSKCDVYFENEELLQNHALNEHLLKREYNCKYCDMTFLTADELKHHQQSHRECLSLFKDDKTLHDHLMIDANGIGFKCTECDLSFVHEKEMREHIQGKHGTPETDKKVDTKKKINNKVKSGDVAGEKMGRSALQIKFRENVLEVLYNSNASTIRNCVDYRYTCCFCSDCYERPEDLKNHNLECHDKSTLKNAMRAKHMNTTLKLDITGLRCTLCDTEMDMLDDLLNHLKDIHNRQIHTDIDNYMVPLKFEDDVLRCTFCREEFVQFRLLMTHIKVHYRNFVCEVCDHGFISKNIYRSHRRSHDIGNYKCDYCERVLDTRTKKLKHERVTHRRLKNVNKCQYCHQTFNEYNKKQKHLAEVHGVKLPGLQCKACDRTFPNRNRYTIHVKRDHLMERRHGCTVCDMKFFTSYELKHHMISHSGVKKYQCDICSRRSIITETTDVKSGQSGELNDELAQIGDTNVIKKKGEELAKHKINLVAILKNSSATPIRCRGGIGYACCYCAQEFPDPKDLKKHTLQMHEEKTRLRLMEGKDIYKFHAKLDITDLKCSICASDIDDLEKLIEHLRNVHNVTMHMDVKNQLVPFKFGSEGLKCFICFSMYHKFKSLLEHMNVHYRNYICDVCNAGFVNRCMLARHAESHRLGSFKCMFCPKVFDTLRKKRSHEKCVHTHSILNRCGYCNEKFRDYRKKEKHLIAVHGAVNVETKCQACDRSFTNQKEYNSHVKRLHLMDKRHKCPECDMAFFTTGELRDHVVKHTGTRQFECEVCHKTYGRRKTLLEHLRIHKDDRRFKCEHCGQAFVQKCSWRGHMRAKHGEKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00357871;
90% Identity: iTF_00357871;
80% Identity: -