Basic Information

Insect: Colias behrii
Gene Symbol: -
Assembly: GCA_029959075.1
Location: JARWMB010000025.1:4406194-4410881[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.07 6.7 8.3 0.8 1 23 40 63 40 63 0.92

2 26 0.22 21 6.8 0.3 2 23 87 109 86 109 0.95

3 26 0.087 8.3 8.0 2.8 1 23 131 153 131 153 0.98

4 26 0.0014 0.13 13.7 2.3 1 23 157 179 157 179 0.98

5 26 0.016 1.5 10.4 0.2 1 23 219 242 219 242 0.92

6 26 0.00023 0.022 16.1 1.8 1 23 248 270 248 270 0.98

7 26 5.4 5.2e+02 2.4 0.8 6 23 273 290 271 290 0.91

8 26 0.0003 0.029 15.8 1.3 1 23 296 319 296 319 0.96

9 26 1.5 1.4e+02 4.2 0.2 2 23 431 453 430 453 0.93

10 26 0.0034 0.33 12.4 0.3 2 23 476 497 475 497 0.97

11 26 9.7e-05 0.0093 17.3 0.6 1 23 501 523 501 523 0.98

12 26 0.39 37 6.0 0.7 1 23 528 551 528 551 0.94

13 26 0.29 28 6.3 2.7 2 23 567 589 566 589 0.91

14 26 0.0093 0.89 11.1 1.7 2 23 597 619 596 619 0.96

15 26 0.00012 0.011 17.0 0.3 3 23 627 647 626 647 0.99

16 26 7.7 7.4e+02 1.9 0.2 1 9 653 661 653 665 0.87

17 26 0.0025 0.24 12.9 1.1 1 23 725 748 725 748 0.95

18 26 8.1 7.7e+02 1.8 0.0 2 23 775 797 774 797 0.90

19 26 2.5 2.4e+02 3.4 2.9 2 23 820 841 819 841 0.96

20 26 0.0039 0.38 12.2 0.2 1 23 845 867 845 867 0.96

21 26 0.25 24 6.5 1.4 1 19 872 890 872 892 0.89

22 26 0.043 4.1 9.0 0.8 2 23 902 924 902 924 0.92

23 26 0.00052 0.05 15.0 1.9 2 23 932 954 931 954 0.96

24 26 0.00046 0.044 15.2 0.5 1 23 960 982 960 982 0.96

25 26 5.8e-05 0.0056 18.0 1.9 1 23 988 1010 988 1010 0.98

26 26 0.00021 0.02 16.2 3.4 1 23 1016 1039 1016 1039 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.07	6.7	8.3	0.8	1	23	40	63	40	63	0.92
2	26	0.22	21	6.8	0.3	2	23	87	109	86	109	0.95
3	26	0.087	8.3	8.0	2.8	1	23	131	153	131	153	0.98
4	26	0.0014	0.13	13.7	2.3	1	23	157	179	157	179	0.98
5	26	0.016	1.5	10.4	0.2	1	23	219	242	219	242	0.92
6	26	0.00023	0.022	16.1	1.8	1	23	248	270	248	270	0.98
7	26	5.4	5.2e+02	2.4	0.8	6	23	273	290	271	290	0.91
8	26	0.0003	0.029	15.8	1.3	1	23	296	319	296	319	0.96
9	26	1.5	1.4e+02	4.2	0.2	2	23	431	453	430	453	0.93
10	26	0.0034	0.33	12.4	0.3	2	23	476	497	475	497	0.97
11	26	9.7e-05	0.0093	17.3	0.6	1	23	501	523	501	523	0.98
12	26	0.39	37	6.0	0.7	1	23	528	551	528	551	0.94
13	26	0.29	28	6.3	2.7	2	23	567	589	566	589	0.91
14	26	0.0093	0.89	11.1	1.7	2	23	597	619	596	619	0.96
15	26	0.00012	0.011	17.0	0.3	3	23	627	647	626	647	0.99
16	26	7.7	7.4e+02	1.9	0.2	1	9	653	661	653	665	0.87
17	26	0.0025	0.24	12.9	1.1	1	23	725	748	725	748	0.95
18	26	8.1	7.7e+02	1.8	0.0	2	23	775	797	774	797	0.90
19	26	2.5	2.4e+02	3.4	2.9	2	23	820	841	819	841	0.96
20	26	0.0039	0.38	12.2	0.2	1	23	845	867	845	867	0.96
21	26	0.25	24	6.5	1.4	1	19	872	890	872	892	0.89
22	26	0.043	4.1	9.0	0.8	2	23	902	924	902	924	0.92
23	26	0.00052	0.05	15.0	1.9	2	23	932	954	931	954	0.96
24	26	0.00046	0.044	15.2	0.5	1	23	960	982	960	982	0.96
25	26	5.8e-05	0.0056	18.0	1.9	1	23	988	1010	988	1010	0.98
26	26	0.00021	0.02	16.2	3.4	1	23	1016	1039	1016	1039	0.97

Sequence Information

Coding Sequence: ATGAATCGAACAGAAAGAGCAAAACAACTTGACTTTAGAGAAAAGCACCAATCTAATGTTCGAAATGTTTTGATGTATTCGAACGCCACGATGATTAGAAGCTGTGATGATAAAGGATACAAATGCGGTTTCTGCCCGGACCACTACACCACACCAGCTGATTTGAAAGAACACTCCTTAAATTCACATACAGGAAATTGTTTTGTAGATATAAAAGTGCTGCGCCCTTACACTGTTAAATTAGATATCACAGATCTAAAATGCACTATTTGTAATTCAAATACACCAACGCTGCAAGACCTGCTAGATCATTTACAAAATAGTCACGACAAAGTTATATACGAGGATATTGAAAACCAATTGGTGTCCTACAAATTTGATGACGATAAGTTTAGATGTGTGTTTTGCAAAGAGGAGTTTCGTAGATTCCCAACGTTGCAGTTTCATATGAATAAGCATTATCGGAATTATGAATGTTATGTGTGCCACGCTGGTTTCATGAACAGCAATAATTTaagagtgcacaaaaaaaaacataaaagtcaAAACTTACGTAAAAAGATTGGTAAAAGTAAAGACATGGAGAATGAAGATGATAGTGCTGAAAATGAAGAAATAGAAGATCAAAATGAAACGTTAACGGAAAATAATCTCCATATATGTAGTGAATGCGATgcgtattttgaaaatgaagagTTGCTCCAAAATCACGCGCTAAATGAACACTCGCTTAAAAGGGACTATAACTGCGAATATTGTGATATGACATTTTTAACAGCAGATGAACTAAAACATCATCAGCAAAGTCATAGAGAATGTCTCAGTTCGTTTAAAGATGATAAAACTTTACATGATCATTTGATTACCCATGCCAATGGCATTGGATTTAAATGCACAGAATGTGATTTGTCATTTGTACATGAAAAAGAGATGCAAGAACATATACAAGAGAAGCATGgtacCCCGGAAACTGACAAAAAAGTCGATAGcacaaagaaaaaaattaagaaagttAAATCTAGTGATGTTGCCGGTAAGAAAATGGGGCGGTctgcattaaaaattaaatttcgtGAAAATGTACTTGAAGTATTGTATAATTCTAATGCATCGGCTATCAGAACTTGTGTTGACTACAGATACACATGTTGTTTTTGCTCCGACTGTTACGAACGTCCGGAGGATTTGAAAAATCACAACATGGAGTGTCACGATAAGTCCACCTTAAGGAATGGAATTAGGGCAAAACACTTGAACTCATTAACTCTGAAACTGGATATTACTGGACTACGATGTACCCTCTGTGATACGAAGATGGACATGTTAGATGATTTATTGAACCACCTTAAAGATATACACAACAGACAAATTCACACCGATATTGATAATTACATGGTTCCTCTTAAGTTCGAAGACGACGTCTTACGTTGCACATTTTGCCGAGAGGAATTTGTCCAATTCAGACTACTAATGGCACACATAAATGTACACTATAGAAATTTTGTATGCGAAGTGTGTGACCATGGATTTATAAATCCGACTACTTATCGATCTCACCTCAGGATCCATGAAATCGGCAATTACAAATGCGACTACTGTGAAAGGGTTATGGATACTAGAGCCAAAAAATTGAACCACGAGAGGGTGACACATAGACGATTGAAGAATTTAGATGGCACAGCGTCGAAATATGTGAATAAGTGCCAGTATTGCCATCAATCGTTCAACGGATATAATAAGAAGCAAAAGCATTTAGCGGAAGTCCACGGGGTGAAACTTCCCGGCTTGCAGTGCAAGGCTTGCGATCTCACGTTCCCAAATCGGCACAGATACACGATTCATATAAAGAGGGATCATCTAATGGAACGGAGACACGGTTGTAAAGTGTGCGACATGAAATTTTACACGTCCTACGCCTTGAAGCAGCACATTATCAGCCATTCTGATGTGAAGAAGTATCAATGTGATATTTGTTCTCGACGTAGCATCAAAACTGAAACAACAGATGTTAAATCAGGACAATCAGGTAAACTGAATGACGAAATAGCTCAAATTGGAGACACGAATGTTATAAAGAAAAAAGGTGAAGAATTGgcaaaacataaaattaatttgGTAGCGATACTTAAAAATTCCACAGCGACTCCGATCCGATGTCGAGGCGGAATAGGTTATGCGTGCTGTTATTGCGCACAAGAATTCCCAGATCCTAAGGATTTGAAGAAACACACAATGCAAATGCATGAAGAGAAAACGAGACTACGGTTAATGGAAGGGAAAGATATCTATAAATTTCACGCAAAGCTCGATATAACTGACCTAAAATGCAGTATTTGTGCAAGTGATATTGACGATCTGGAAAAACTTATTGAACATCTCAGAAACGTTCATAACGTCACAATGCACATGGATGTGAAAAATCAACTGGTTCCCTTCAAGTTTGGTAGCGAAGGACTGAAATGTTTTATGTGCTTTAGCGTGTATCATAAATTTAAATCGCTTTTAGAGCATATGAACGTACATTATAGAAATTATATATGTGATGTGTGCAACGCTGGATTCGTGAACCGTTGTATGCTGGCCCGGCATGCGGAGAGCCACAGGCTCGGATCGTTCAAATGTATGTTCTGTCCGAAGGTATTTGACACGCTCAGGAAGAAACGGTCGCACGAAAAGTGCGTGCACACACATTCGGTACTCAACAGATGTGGCTATTGCAACGAGAAATTTAGGGACTATAGGAAAAAAGAGAAACATCTCATAGCAGTTCACGGTGCGGTCAATGTAGAGACGAAGTGCCAAGCCTGTGATAGGACATTCACGAATCAAAAGGAGTACAATTCCCACGTGAAGAGGCTGCATTTGATGGACAAGAGACATAAATGCCCAGAGTGTGATATGGCCTTTTTTACCACTGGAGAGCTGAGAGATCATGTCGTGAAACACACGGGTACAAGGCAGTTTGAGTGTGAGGTGTGTCATAAGACGTACGGAAGGAGGAAGACTCTATTGGAACATTTGAGGATACATAAAGACGATAGACGGTTTAAGTGCGAGCATTGTGGGCAGGCGTTTGTGCAGAAGTGCAGTTGGCGGGGACATATGCGTGCGAAGCATGGGGAAAAGGTCTAG
Protein Sequence: MNRTERAKQLDFREKHQSNVRNVLMYSNATMIRSCDDKGYKCGFCPDHYTTPADLKEHSLNSHTGNCFVDIKVLRPYTVKLDITDLKCTICNSNTPTLQDLLDHLQNSHDKVIYEDIENQLVSYKFDDDKFRCVFCKEEFRRFPTLQFHMNKHYRNYECYVCHAGFMNSNNLRVHKKKHKSQNLRKKIGKSKDMENEDDSAENEEIEDQNETLTENNLHICSECDAYFENEELLQNHALNEHSLKRDYNCEYCDMTFLTADELKHHQQSHRECLSSFKDDKTLHDHLITHANGIGFKCTECDLSFVHEKEMQEHIQEKHGTPETDKKVDSTKKKIKKVKSSDVAGKKMGRSALKIKFRENVLEVLYNSNASAIRTCVDYRYTCCFCSDCYERPEDLKNHNMECHDKSTLRNGIRAKHLNSLTLKLDITGLRCTLCDTKMDMLDDLLNHLKDIHNRQIHTDIDNYMVPLKFEDDVLRCTFCREEFVQFRLLMAHINVHYRNFVCEVCDHGFINPTTYRSHLRIHEIGNYKCDYCERVMDTRAKKLNHERVTHRRLKNLDGTASKYVNKCQYCHQSFNGYNKKQKHLAEVHGVKLPGLQCKACDLTFPNRHRYTIHIKRDHLMERRHGCKVCDMKFYTSYALKQHIISHSDVKKYQCDICSRRSIKTETTDVKSGQSGKLNDEIAQIGDTNVIKKKGEELAKHKINLVAILKNSTATPIRCRGGIGYACCYCAQEFPDPKDLKKHTMQMHEEKTRLRLMEGKDIYKFHAKLDITDLKCSICASDIDDLEKLIEHLRNVHNVTMHMDVKNQLVPFKFGSEGLKCFMCFSVYHKFKSLLEHMNVHYRNYICDVCNAGFVNRCMLARHAESHRLGSFKCMFCPKVFDTLRKKRSHEKCVHTHSVLNRCGYCNEKFRDYRKKEKHLIAVHGAVNVETKCQACDRTFTNQKEYNSHVKRLHLMDKRHKCPECDMAFFTTGELRDHVVKHTGTRQFECEVCHKTYGRRKTLLEHLRIHKDDRRFKCEHCGQAFVQKCSWRGHMRAKHGEKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00358844;
90% Identity: iTF_00358844;
80% Identity: -