Ccro021727.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991981.1:6784516-6787365[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1 80 4.4 1.5 2 23 12 33 12 33 0.95 2 20 0.035 2.8 9.0 0.3 2 23 56 77 55 77 0.96 3 20 0.012 0.92 10.5 0.1 1 23 81 103 81 103 0.95 4 20 0.021 1.7 9.7 0.3 1 15 108 122 108 131 0.77 5 20 0.0027 0.22 12.5 0.2 1 23 137 160 137 160 0.95 6 20 0.00032 0.025 15.4 0.9 1 23 167 190 167 190 0.96 7 20 5.8e-06 0.00046 20.9 3.2 1 23 197 219 197 219 0.97 8 20 4.5e-05 0.0036 18.1 2.7 1 23 225 247 225 247 0.98 9 20 0.015 1.2 10.1 0.8 1 23 321 343 321 344 0.95 10 20 1.7 1.3e+02 3.7 0.5 2 23 371 393 370 393 0.93 11 20 0.0011 0.089 13.7 1.0 1 23 415 437 415 437 0.99 12 20 1e-05 0.00082 20.1 0.9 1 23 441 463 441 463 0.98 13 20 0.0076 0.6 11.1 0.3 1 23 497 520 497 520 0.90 14 20 0.00059 0.047 14.6 3.0 1 23 527 550 527 550 0.98 15 20 0.12 9.2 7.3 0.2 2 23 604 625 603 625 0.96 16 20 0.049 3.8 8.5 0.7 2 23 650 672 649 672 0.92 17 20 0.0032 0.25 12.3 4.5 1 21 718 738 718 740 0.95 18 20 0.00067 0.053 14.4 0.1 1 23 745 768 745 768 0.93 19 20 0.011 0.88 10.6 1.1 1 23 774 797 774 797 0.95 20 20 0.017 1.3 10.0 0.3 1 23 803 826 803 826 0.97
Sequence Information
- Coding Sequence
- ATGTCGCTAATAAACGTAGATGTGACAGATGCTGTATGTAGGATATGCTTATGCCCCTTCTCTGGCGTGGTCCACATGAGGCGACATGTGCAAGAACACAATTTCGACTTCGACGAATCCTACCCAGATGGTGTCCTACCATTCAGCCTCAATAAGGATTTCTGGTCGTGCGTGCTTTGCGAAGAGAAGTTTAATAACTTTTTGAAATTGTACGAGCATATGAATGTGCATTATCAGCATTATATTTGCGCGACATGCGGCAAAGGTTATATGACTGCGCCGCGTTTAAGAAAACATTCTGAAGTTCATATTAAAGGATGCTTTCCGTGCGATAAATGTGGACGTAGCTTTACGATGCGAGCGGCTAGGGATTATCACAAGGCGAATGCGCATGCGAAGGGGCCGAGGTACGAATGCCCTCAATGTGACATGCGGTTCTCCGGGTATTACGAACGAATGAACCATTTGAACGAAGCGCATAAAGTGAAAGAAGTATCTTACGATTGTTCTTATTGTGAGAAAACGTTTAAAACGAGTGGGAAACGCGCGCTGCACGTCCGTTCGGTACATTTTCCTCAAAAACGTAGCTTCAGTTGCACGTATTGTGAATGGCATTTTAAAACTGCGTACGAATTGAAAAGGCACATGGTAAAACATACTGGGGAGAGGAAGTTTTCTTGTAATGTTTGTGGGAAATGTTTTCTACGGAGCAAAGCGCTTAGGTCCCATCTTAAAGTACATGATGAATTCGGATGTTCCGCTATAGCGGATACAGGGGTAGTAAGGCCTAAGAAGTTGAAGGAACATGTAGGTCCGCGACAAATGCGTCGCCGAAGACGCGCCAACAACGAGCTCGCGGAGGAATCGGAGAAACGCATCGCAAAGACAATGATGAGAAGGAATGCTATCGCTATTCTGGAACATTCTACCGCGTGGGCTTTTCGATGGTTTCGCAGCGCGTTCTATTGTTCCTATTGTGATGGTAGATTCCTGGAACCAGAGTTACTAAGAGATCATATTCGTCTGCATCATTTGCACCAAGCGCCTACTAAACGAATATTCGCCAAATTAACAGAAAATAATATGGTCAAAGTCGAGATATCTGATTTATGTTGTAGGTTATGTGGTATTCGATTAGATAGTATAGAAGCTTTTAAAGAACATCTGGTTACAACGCACGGAAAAACCTTAAATTTAGAGTACAGCGATGGCGTTCTACCCTTCAAACTAAGTCCTAATAACTTTAAATGTCCCAAATGTACAATATACTTTGTTTCGTTCGCTAAAATGAATGAACACATGAATAGTCATTATAAAAATTACGTTTGCGATACGTGCGGGAAGGCATTTATATCAAAGTCGAGGTTTAGGACCCACGTCCAGTCTCATGAGGTTGGCACGTTCCCGTGTGGTATTTGTGACGTCATTCTTGAAACGAGAGCGTCTCGTATATGTCATAGATCGAAGGTGCATCAAAAAGGTATAAGATACACGTGTCCGCGGTGTCCGGAAGTGTTTTCCAAATATTACGCGAGAGTGAAGCATCTGGTCGAAACGCACGGACAGCAAAGGATGGAATACGAGTGCGTTTATTGTGGCAAATGCTTTGGGACTAGTTGTAAGCGATCGGCTCATATCCGTGTAGCTCATAAGGATGGGAAAGTAGGAAGCGCAGCATTGGACGGTACTTCAAGTAACGTCATGATTAAATGGAAAAAGAAGACGAGGGTAACAGAAGAGAAAGCAAATGCTGCCGCTATATTAGAATTCTCTAATGCAGTGGCTTTTAGGTGGTTGCGTGGGAAACTAATGTGTGCTTATTGTCCCGTAATTTGCGTGAATATGATGGAATTACGTGTACATACACAAATACATGATAAACTGGATTTGGTTACGAAACCCGAAATAAGAAACTCGTTCCCTTTACGTATAGATATCTCGGATTTAACATGCACTATATGCAATCTGTCAGTTGGTAAACTAACCAATTTAGAAACACATTTAGCTCATAAACACGAAAAGAACATACCGCCAGAAAATGGGGTTATTCCTTTCGTGTTAACTGATAAAGAATTACGTTGCGTTCACTGCGGAGTACTATTCCAATGTTTTATGACTCTCTCCATACATATGAATAAGCATTATCAAACATACGTTTGCCACGCCTGCGGGAAAGCGTATTCGGCTAAACATAAACTGCGCGCTCATATGAAATGCCACGAGTCAGGTCAATTTGCGTGTCCAATTTGTAATATGGTATTTTCTAACCGTGTTCTCAAGAACAGGCATGTCGCGATCGTACACGGGCCAAAGAAAAGGTACCGTTGTCCGCTTTGCAATGAACCTTTCGATTCCTACCACTCTAGGTTACAGCATCTCGATAAAATACATGATCAGAAATCTGAGTACCCCTGCCACTTGTGTCCGGCCACATTTGGCAGTGCGACAAGCCGGTATTCACACGTCCGGGTCGTGCACAAGAAAAAGAAGGGATTCATGAAATAA
- Protein Sequence
- MSLINVDVTDAVCRICLCPFSGVVHMRRHVQEHNFDFDESYPDGVLPFSLNKDFWSCVLCEEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHIKGCFPCDKCGRSFTMRAARDYHKANAHAKGPRYECPQCDMRFSGYYERMNHLNEAHKVKEVSYDCSYCEKTFKTSGKRALHVRSVHFPQKRSFSCTYCEWHFKTAYELKRHMVKHTGERKFSCNVCGKCFLRSKALRSHLKVHDEFGCSAIADTGVVRPKKLKEHVGPRQMRRRRRANNELAEESEKRIAKTMMRRNAIAILEHSTAWAFRWFRSAFYCSYCDGRFLEPELLRDHIRLHHLHQAPTKRIFAKLTENNMVKVEISDLCCRLCGIRLDSIEAFKEHLVTTHGKTLNLEYSDGVLPFKLSPNNFKCPKCTIYFVSFAKMNEHMNSHYKNYVCDTCGKAFISKSRFRTHVQSHEVGTFPCGICDVILETRASRICHRSKVHQKGIRYTCPRCPEVFSKYYARVKHLVETHGQQRMEYECVYCGKCFGTSCKRSAHIRVAHKDGKVGSAALDGTSSNVMIKWKKKTRVTEEKANAAAILEFSNAVAFRWLRGKLMCAYCPVICVNMMELRVHTQIHDKLDLVTKPEIRNSFPLRIDISDLTCTICNLSVGKLTNLETHLAHKHEKNIPPENGVIPFVLTDKELRCVHCGVLFQCFMTLSIHMNKHYQTYVCHACGKAYSAKHKLRAHMKCHESGQFACPICNMVFSNRVLKNRHVAIVHGPKKRYRCPLCNEPFDSYHSRLQHLDKIHDQKSEYPCHLCPATFGSATSRYSHVRVVHKKKKGFMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357867;
- 90% Identity
- iTF_00357867;
- 80% Identity
- -