Cbeh025822.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000025.1:1404667-1409342[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.051 4.9 8.7 0.4 1 20 80 99 80 101 0.94 2 21 1.9 1.8e+02 3.8 1.4 2 23 129 150 129 150 0.95 3 21 0.05 4.8 8.8 0.3 2 23 173 194 172 194 0.96 4 21 0.016 1.6 10.3 0.1 1 23 198 220 198 220 0.95 5 21 0.03 2.9 9.5 0.3 1 15 225 239 225 248 0.77 6 21 0.0039 0.37 12.3 0.2 1 23 254 277 254 277 0.95 7 21 0.00045 0.043 15.2 0.9 1 23 284 307 284 307 0.96 8 21 8.1e-06 0.00078 20.7 3.2 1 23 314 336 314 336 0.97 9 21 6.4e-05 0.0061 17.9 2.7 1 23 342 364 342 364 0.98 10 21 0.015 1.4 10.4 1.8 1 23 438 460 438 461 0.95 11 21 1.5 1.4e+02 4.1 0.3 2 23 488 510 487 510 0.91 12 21 0.0016 0.15 13.5 1.0 1 23 532 554 532 554 0.99 13 21 1.5e-05 0.0014 19.9 0.9 1 23 558 580 558 580 0.98 14 21 0.011 1 10.9 0.3 1 23 614 637 614 637 0.90 15 21 0.00083 0.08 14.4 3.0 1 23 644 667 644 667 0.98 16 21 0.51 49 5.6 0.0 2 23 727 748 726 748 0.95 17 21 0.0072 0.69 11.4 0.2 2 23 773 795 772 795 0.93 18 21 0.0045 0.43 12.1 4.5 1 21 841 861 841 863 0.95 19 21 0.00059 0.056 14.8 0.0 1 23 868 891 868 891 0.93 20 21 0.043 4.2 9.0 3.0 1 23 897 920 897 920 0.96 21 21 0.023 2.3 9.8 0.3 1 23 926 949 926 949 0.97
Sequence Information
- Coding Sequence
- ATGGGCTGTTCGCTGCCGTACTCGGATCGATACGCGATTAGAGTCTATAGTATACTACGACAATCTGGAAATGACGAAAACAACTTAAACGATATTGAATCGTGCTCTCAAATTAAAAGTGAGAAACCGAAATATCAAAGGAGTGCAAGAGCCGAAGCAAGATTTGCGACGAAAAAGAACGCGAGTGCTATACTAGAGTGTTGGGTCTTGACCCCATTTCGATGGAAGACAAATAGATTTAAATGTGCCTATTGTGAGAACAGCTTTACTGCCTGCACTGAGCTTAGAGAACATGTAGCTGTATGCTCAACTTTACATACCGTTCAGGATATATACAGTAAATTCAAAGAGATGTCGCTCATAAACGTGGACGTGACAGACGCTGTGTGCAGGATATGCTTATGCCCCTTCTCTGGCGTGCCTCACATGAGGCGACATGTGCAAGAACACAATTTTGACTTCGACGAATCCTACCCAGATGGTGTCCTGCCATTCAGCCTCAATAAGGATTTCTGGTCTTGTGTCCTTTGCGAAGAGAAGTTTAATAACTTTTTGAAATTGTACGAGCATATGAATGTGCATTATCAGCATTATATTTGCGCGACATGCGGCAAAGGTTACATGACTGCGCCGCGTTTGAGAAAACATTCTGAAGTTCATATTAAAGGATGCTTTCCTTGCGATAAATGTGGACGTAGTTTTACAATGCGAGCAGCTAGGGATTATCACAAGGCGAATGCGCATGCAAAGGGGCCGAGGTACGAATGCCCTCAATGTGACATGCGGTTTTCCGGGTATTACGAACGAATGAACCATTTGAACGAAGCGCATAAAGTCAAAGAAGTGTCTTACGATTGTTCCTACTGTGAAAAAACGTTTAAGACGAGTGGTAAACGCGCGTTGCACGTCCGTTCGGTCCATTTCCCGCAAAAACGTAGCTTCAGTTGCACGTATTGTGAGTGGCATTTCAAAACTGCGTACGAATTGAAAAGGCACATGGTAAAACATACTGGGGAAAGGAAGTTTTCTTGTAATGTTTGCGGTAAATGTTTTCTACGGAGCAAAGCGCTTAGGTCCCATCTCAAAGTACATGATGAATTCGGATGTTCCGCTTTAGCGGATACAGGGCTAGTAAGGCCTAAGAAGTTGAAGGAACATGTAGGTCCGCGACAAATGCGTCGTCGGAGACGCGCCAACAACGAACTGGCGGAGGAATCGGAGAAACGCATCGCAAAGACAATGATGAGAAGGAATGCTATCGCCATTCTGGAACATTCTACCGCGTGGGCTTTCCGATGGTTTCGAAGCGCGTTCTATTGTTCATATTGTGATGGTAGATTCCAGGAACCAGAGTTACTAAGAGATCATTTTCGTCTGCATCATTTGCACCAAGCGCCTACTAAACGAATATTCGCCAAATTAACAGAAAATAATATGGTCAAAGTCGAGATATCTGAATTGTGTTGTAGGTTGTGTGGTATACGTTTAGATAGTATAGAGGCGTTAAAAGAACATCTAGTTTCAACGCACGGAAAGACCTTAAATTCAGAGTACAGTGACGGCGTACTACCTTTCAAACTGAGCCCTAATAACTTTAAATGCCCCAAATGTACAATATACTTTGTTTCGTTCGCTAAAATGAACGAACACATGAACAGTCACTATAAAAATTACGTTTGCGATACGTGCGGAAAGGCATTTATATCAAAGTCGAGGTTTAGGACCCACGTTCAGTCTCATGAGGTTGGCACGTTCCCATGTGGTATTTGTGACGTCATTCTTGAAACTAGAGCGTCTCGTATATGTCATAGATCGAAGGTGCATCAGAAAGGTATTAGATATACCTGTCCGCGATGTCCGGAAGTGTTTTCCAAATATTACGCGAGAGTGAAGCATCTGGTCGAAACGCACGGACAGCAAAAGATGGATTATGAGTGCGTTTACTGTGGTAAATGCTTTGGAACTAGCTGTAAGCGATCAGCTCATATCCGTGTAGCTCATAAGGATGGGAAAGTGGGTTTTGATGCAAGTTACGGAAATGAAGCATTGGGCGGTACTACAAGTAACGTCATGATTAAATGGAAAAAGAAGACGAGGGTAACAGAAGAGAAAGCAAATGCTGCCGCTATATTAGAATTCTCTAATGCAGTGGCTTTTAGGTGGTTGCGTGGGAAAGTAATGTGTGCTTACTGTCCGGTAATTTGCGTCAATATGATTGAATTGCGGGTACACGCACAAATACATGATAAACTGGATTTGGTTACGAAACCCGAAATAAGAAACTCGTTCCCTTTACGTATAGATATCTCGGATTTAACATGCACTATATGCAATCTGTCAGTTGAAAACCTAACCAATTTAGAAACACATTTAGCTAATAAACATGACAAGAACATACCTCCGGAGAATGGGGTTATTCCTTTCGTGTTAACTGATAAAGAATTGCGATGCGTTCACTGCGGAGTATTATTCCAATGTTTTATGACTCTCTCGATACATATGAATAAGCATTATCAAACCTATGTTTGTCACGCCTGCGGGAAAGCGTATTCTGCTAAACATAAACTACGCGCTCATATGAAATGCCACGAGTCCGGTCAATTTGCGTGTCCAATTTGTAATATGGTATTTTCTAACCGAGCTCTCAAGAACAGACATGTCGCGATCGTACACGGGCCAAAGAAAAGGTACCGTTGTCCGCTTTGCAATGAACCTTTCGATTCCTACCACTCTAGGTTACAGCATCTCCATAAAATACACGATCAGAAATCTGAGTACCCCTGCCACTTGTGTCCGGCCACATTTGGCAGTGCGACAAGCCGGTATTCACACGTCCGGGTCGTGCACAAGAAAAAGAAGGGATTCATGAAATAA
- Protein Sequence
- MGCSLPYSDRYAIRVYSILRQSGNDENNLNDIESCSQIKSEKPKYQRSARAEARFATKKNASAILECWVLTPFRWKTNRFKCAYCENSFTACTELREHVAVCSTLHTVQDIYSKFKEMSLINVDVTDAVCRICLCPFSGVPHMRRHVQEHNFDFDESYPDGVLPFSLNKDFWSCVLCEEKFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHIKGCFPCDKCGRSFTMRAARDYHKANAHAKGPRYECPQCDMRFSGYYERMNHLNEAHKVKEVSYDCSYCEKTFKTSGKRALHVRSVHFPQKRSFSCTYCEWHFKTAYELKRHMVKHTGERKFSCNVCGKCFLRSKALRSHLKVHDEFGCSALADTGLVRPKKLKEHVGPRQMRRRRRANNELAEESEKRIAKTMMRRNAIAILEHSTAWAFRWFRSAFYCSYCDGRFQEPELLRDHFRLHHLHQAPTKRIFAKLTENNMVKVEISELCCRLCGIRLDSIEALKEHLVSTHGKTLNSEYSDGVLPFKLSPNNFKCPKCTIYFVSFAKMNEHMNSHYKNYVCDTCGKAFISKSRFRTHVQSHEVGTFPCGICDVILETRASRICHRSKVHQKGIRYTCPRCPEVFSKYYARVKHLVETHGQQKMDYECVYCGKCFGTSCKRSAHIRVAHKDGKVGFDASYGNEALGGTTSNVMIKWKKKTRVTEEKANAAAILEFSNAVAFRWLRGKVMCAYCPVICVNMIELRVHAQIHDKLDLVTKPEIRNSFPLRIDISDLTCTICNLSVENLTNLETHLANKHDKNIPPENGVIPFVLTDKELRCVHCGVLFQCFMTLSIHMNKHYQTYVCHACGKAYSAKHKLRAHMKCHESGQFACPICNMVFSNRALKNRHVAIVHGPKKRYRCPLCNEPFDSYHSRLQHLHKIHDQKSEYPCHLCPATFGSATSRYSHVRVVHKKKKGFMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358840;
- 90% Identity
- iTF_00358840;
- 80% Identity
- -