Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991969.1:3964668-3980320[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 7.2e-05 0.0057 17.4 2.2 1 23 429 451 429 451 0.97

2 20 0.00099 0.078 13.9 1.5 1 20 457 476 457 479 0.94

3 20 0.0011 0.089 13.7 4.8 1 23 498 520 498 520 0.98

4 20 1.5e-05 0.0012 19.6 5.6 1 23 526 548 526 548 0.99

5 20 3.2e-05 0.0025 18.6 5.3 1 23 554 576 554 576 0.97

6 20 1e-05 0.00081 20.1 7.3 1 23 582 604 582 604 0.97

7 20 3.1e-07 2.5e-05 24.9 2.5 1 23 610 632 610 632 0.97

8 20 9.1e-05 0.0072 17.1 6.7 1 23 638 660 638 660 0.97

9 20 9.1e-05 0.0072 17.1 6.5 1 23 666 688 666 688 0.97

10 20 4.4e-07 3.5e-05 24.4 1.9 1 23 694 716 694 716 0.98

11 20 4.5e-05 0.0035 18.1 7.9 1 23 722 744 722 744 0.98

12 20 7.1e-06 0.00056 20.6 6.6 1 23 750 772 750 772 0.98

13 20 6.3e-07 5e-05 23.9 2.7 1 23 778 800 778 800 0.99

14 20 5.3e-06 0.00042 21.0 6.2 1 23 806 828 806 828 0.96

15 20 1e-05 0.00079 20.1 7.0 1 23 834 856 834 856 0.98

16 20 2.7e-06 0.00022 21.9 6.0 1 23 862 884 862 884 0.98

17 20 6.1e-05 0.0048 17.7 6.5 3 23 892 912 892 912 0.98

18 20 2.2e-06 0.00018 22.2 4.1 1 23 918 940 918 940 0.96

19 20 0.00049 0.039 14.8 0.3 1 23 947 969 947 969 0.96

20 20 0.032 2.5 9.1 6.4 1 23 978 1000 978 1000 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	7.2e-05	0.0057	17.4	2.2	1	23	429	451	429	451	0.97
2	20	0.00099	0.078	13.9	1.5	1	20	457	476	457	479	0.94
3	20	0.0011	0.089	13.7	4.8	1	23	498	520	498	520	0.98
4	20	1.5e-05	0.0012	19.6	5.6	1	23	526	548	526	548	0.99
5	20	3.2e-05	0.0025	18.6	5.3	1	23	554	576	554	576	0.97
6	20	1e-05	0.00081	20.1	7.3	1	23	582	604	582	604	0.97
7	20	3.1e-07	2.5e-05	24.9	2.5	1	23	610	632	610	632	0.97
8	20	9.1e-05	0.0072	17.1	6.7	1	23	638	660	638	660	0.97
9	20	9.1e-05	0.0072	17.1	6.5	1	23	666	688	666	688	0.97
10	20	4.4e-07	3.5e-05	24.4	1.9	1	23	694	716	694	716	0.98
11	20	4.5e-05	0.0035	18.1	7.9	1	23	722	744	722	744	0.98
12	20	7.1e-06	0.00056	20.6	6.6	1	23	750	772	750	772	0.98
13	20	6.3e-07	5e-05	23.9	2.7	1	23	778	800	778	800	0.99
14	20	5.3e-06	0.00042	21.0	6.2	1	23	806	828	806	828	0.96
15	20	1e-05	0.00079	20.1	7.0	1	23	834	856	834	856	0.98
16	20	2.7e-06	0.00022	21.9	6.0	1	23	862	884	862	884	0.98
17	20	6.1e-05	0.0048	17.7	6.5	3	23	892	912	892	912	0.98
18	20	2.2e-06	0.00018	22.2	4.1	1	23	918	940	918	940	0.96
19	20	0.00049	0.039	14.8	0.3	1	23	947	969	947	969	0.96
20	20	0.032	2.5	9.1	6.4	1	23	978	1000	978	1000	0.99

Sequence Information

Coding Sequence: ATGAACCAGGACCACCATAGTATCAACGCGGGTGGCGGCCAGCCCCCAGGCAATACAGAGTCCCAAAATCAAAGAGTTCAGTCTGCTCAACAGCAGCAACAGAGTAATCTTACTCCTGCTACATCTGCTACTGACCTACGGGTCAACTCGGCAGCTGTGAATGTAGCTTTGTCGAGCGTCGCTAAATATTGGGTGTTTACAAATCTGTTTCCCGGCCCATTACCACAAGTTTCTGTGTATGGCCTACCAGCCAATGCTAGGATTGAAAATGGGAAGCCTGTCCAGGATCTTGGACAAGCACATGCTAGTATACTGAACGGAGATCCTAATATAATATTAGGTCATCACTCAGGCCAGCCACAGGTCACAGTGTCTGCTGGTGGTCAACAGATTCCCATATCTCAAATAATAACAACTCAATCAGGACAAGGACATGAAGCTCTTGTGGCACATAATCAGCAACAAGAGCTCACAGCACAGCAAGCCGCAGCTGGAGCTTCACAGGTGTCGGTTGGTTCAGGGCAGGCTTCTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTTCAACACCATAACATTGATATGCAACACCTACTTCAACAACAGTTGATGGCTGCCCGGCCTGAGCATGCCAACCAACAGATTCAACTGACAGTAAGCGAAGATGGTATTGTTACTGTGGTGGAGCCAGGGGGCGGCAAGCTTGTGGACAAGGATGAACTACACGAAACTATCAAGATGCCAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCATCAGGTAATAGATAGTGTGGTTCGCATTGAGCAAGCTACCGGCGAACCAGCAAATATATTAGTCACACAAAATCCTGACGGAACAACATCTATAGAAACAAGTGCAGCAGATCCCTTGTTGGTTAAAGATGAAAAGAATGTCGGTAAAATTGAGGCGGCGCAGTTTGCTGCACCCACTGAAATAAAAGATATCAAAGGGATTGATTTGAAGAGTGTTGGTGCAATGGGCATGGAAGGCGCTGTGGTGAAGATATCTGCAGCGGCGTCAGACCACGACTTGCACGCAATGTACAAAGTTAATGTTGAGGATTTGTCTCAGCTTCTCGCATATCATGAGGTTTTCGGGAAACTCAACTCGGAGGCGCAACAACCGCAACAGCAGCAACCGCAGCAACAAACGCAAGAGTCTAAGCCTGTATTATACGAAGTGGAGATAGAAGCGGGAACTAGTGCAACCATGTCAGAAGCCGAGGCCTCTCCTGGTCATCATTCCTGTGATATTTGTGGAAAAATATTCCAATTTAGATATCAACTTATTGTTCACAGGCGATATCACGGAGAAAATAAACCATACACATGTCAAGTATGTGGAAATGCCTTCTCCAATCCCACAGAACTATCAAAACATGGCAAATGTCATTTAGCTGGCGACCTTGCCGAGAGACAAGCGAAACGTCTCTCCCAAGACAAGCCATATGCTTGCTCCACATGTCACAAGACATTCTGGCGTAAGGAGCACCTCGATAACCATGTACGGACGCACACTGGAGAGACACCTTACAGATGTCAATACTGTTCAAAAACATTTACGCGCAAAGAGCACATGGTGAATCACGTACGAAAGCACACGGGCGAAACTCCGCATCGCTGCGAAATTTGCAAGAAGAGCTTCACAAGGAAGGAGCATTTTATGAACCACGTCATGTGGCATACTGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGCTCGCATACTAACGACACGCCGTTCCGATGCGAAGTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATATTGTGGCACTCCGGTGAAACCCCGCACCGCTGCGACTTCTGCTCAAAGACGTTTACGCGCAAGGAGCATCTATTGAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCAACTTCTGCTCGAAGTCGTTCACGCGCCGCGAACACCTCGTCAACCACGTGCGTCAGCACACGGGCGAGACGCCCTTCCAGTGCGGCTACTGTCCCAAAGCCTTCACCAGGAAGGATCATTTAGTGAACCACGTCCGGCAGCACACGGGCGAGTCTCCGCACAAATGTTCTTTCTGCACGAAGTCGTTTACGCGCAAAGAGCACTTGACGAATCACGTGCGACAACACACGGGCGAATCCCCGCACCGGTGTACATACTGTGCTAAATCCTTCACCAGAAAAGAACACCTCACTAATCATATCAGACAGCATACAGGGGAGGCTCCATACAAGTGTACGCTATGTCCCCGCGCGTTCGTGCGGAAGGAACACCTTAAAACGCACGTGCGCACGCACACGGGCGAGTCGCCGCACGCCTGCACGTACTGCAACAAGACCTTCACGCGCAAGGAGCACCTCAACAACCACGTGAGACAACACACGGGCGAGACGCCGTTCAAGTGCACGTACTGCGTGAAGTCGTTCTCGCGCAAGGAGCACCTCACGAACCACATGCACCTGCACACGGGCGAGACGCCGCACAAGTGCCCCTTCTGCACCAAAACCTTCTCGAGGAAGGAGCATCTGACCAATCACGTTCGAATACACACTGGCGAATCACCACACTGGTGTCAGTTCTGCAAAAAGACGTTTACGCGCAAAGAGCATCTCACGAATCACATGAAGCAGCACACCGGAGACTCGTCGCACGCTTGCAAGATTTGCTCTAAACCCTTCACGAGGAAGGAACACCTCGTCACGCATATGAGGTCTCACAGTTGTGGCGAGCGACCATATAGCTGTGGAGAATGCGGCAAATCATTCCCGTTAAAAGGAAACCTCCTCTTCCATGAGCGATCACATAATAAAGGAGCAAATTCTAAAGTATTCAAATGTGAAGTTTGTTCAAAGGATTTTATGTGTAAATCACACTTAGTAACACATCGTCGGTCGCACGCCGCCACAGCAGAAAATAATGCAACAGCTGAACCTCCAGTAGAAATCGAAGACTGTACAAATGAGTGCAATAAATGTGATGGTAAAGACCCACTCGACGTGGATAGAAAGCCTGATATAAGAGCATCATCGGAAAGCAGATCAACTGAAAATACGGCTACTCAAGCTCAAACCAACACTGTGATGCAAATTACAACACAGCAAGTGCAATCAACAGCAGCAACAAGCGCAACCAACGTCACTGCTGGCACTTTTACTGCAACACAGCACCACGCCGGCGCTGCGATAGCGCACCACCCGGTCACCGTGAACTACTAG
Protein Sequence: MNQDHHSINAGGGQPPGNTESQNQRVQSAQQQQQSNLTPATSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPLPQVSVYGLPANARIENGKPVQDLGQAHASILNGDPNIILGHHSGQPQVTVSAGGQQIPISQIITTQSGQGHEALVAHNQQQELTAQQAAAGASQVSVGSGQASHQQVPNNRVEFVQHHNIDMQHLLQQQLMAARPEHANQQIQLTVSEDGIVTVVEPGGGKLVDKDELHETIKMPTXXXXXXXXXXXXXXHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLLVKDEKNVGKIEAAQFAAPTEIKDIKGIDLKSVGAMGMEGAVVKISAAASDHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEAQQPQQQQPQQQTQESKPVLYEVEIEAGTSATMSEAEASPGHHSCDICGKIFQFRYQLIVHRRYHGENKPYTCQVCGNAFSNPTELSKHGKCHLAGDLAERQAKRLSQDKPYACSTCHKTFWRKEHLDNHVRTHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCEVCGKSFTRKEHFTNHILWHSGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGEAPYKCTLCPRAFVRKEHLKTHVRTHTGESPHACTYCNKTFTRKEHLNNHVRQHTGETPFKCTYCVKSFSRKEHLTNHMHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHWCQFCKKTFTRKEHLTNHMKQHTGDSSHACKICSKPFTRKEHLVTHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKGANSKVFKCEVCSKDFMCKSHLVTHRRSHAATAENNATAEPPVEIEDCTNECNKCDGKDPLDVDRKPDIRASSESRSTENTATQAQTNTVMQITTQQVQSTAATSATNVTAGTFTATQHHAGAAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00771241;
90% Identity: iTF_00357850;
80% Identity: -