Ccro008494.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Colias croceus
Gene Symbol
Hr39
Assembly
GCA_905220415.1
Location
HG991960.1:2996415-3011099[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.24 2.8e+03 -2.2 7.6 47 192 190 332 121 364 0.48
2 4 5.8e-08 0.00069 19.5 0.1 1 20 436 455 436 471 0.91
3 4 1.3e-12 1.6e-08 34.8 0.0 150 238 487 583 463 586 0.70
4 4 2.3e-63 2.7e-59 202.0 0.0 208 408 588 788 583 788 0.93

Sequence Information

Coding Sequence
ATGAACGCAATGAACAGCGAGGGTGAGGCGGTGAAGGTGGAAGGAGGTCGCATTTCCGTGACAACTATCAGCATGCCTGGACCAAATACGAGTAGTGGCCAATTCTCGTACAGTTCGAGCGGGATCCGGATCAGCGTGTCTTCAGACCCTCACGATGAAGACTCGACTGATGCTGAGATCTCCAAAATTGACTTCACGCAACATCCATCTGAGGTGAACATGCGTAACAAGAAAAAGCGATCGTCAGGTTGCGATGGTCCCCTTGAGCAGGAGAGACCGATGTCCTGGGAGGGCGAGCTTTCTGACCATGAAATGGTCATAGACACCAGTGTTAATAATGACGAGACAAGCAACTTAGACCTCCAGTCCTCTCGAGATTCCATAGACACACTGCGCAATGTGACGATAAAATCGGAAACGGTCAAGACCGAACCGTTCCAAAGTCTGGATGATGATCGAGTGCTGGACCTGAAGTATGCGCCATTGCAACCGCATCAGAGAAGCCTCAGTATGAATAGAATATCAGTCCTAACAGACAGTACATCTCTATCCCTTGCCCGGCGGCCATCTTCACCGACGAGCAGTGCAAAGTCCCTGGCCCTGTCCGACCAGTATGAACACATGTCGCACATGGCCAGTGGAATGACTGAGGTCCAGAACTTGACTATAAAGAAGGAAACTCAATTGAATGAATTAAAATGCGAGCCACTAGGCATGGAGAAGCTGCTAGGAGCTCACGGGTCGCCGCTGCTCGGCCGCCTGCCGAGAGTGCAGTCCAGCGCCAGTACTGACTCCGCCGTACATTCCATGTACACGCATAGTGTATACAGCAGTCCGTCAGCGAGCCCGCGTCCGTCCCGTCACTACACGCCGTCCCTTTCTCGCAACAATAGTGACGCGTCACATTCCTCCTGCTACTCTTATAGCTCGGAGTTTTCGCCTACACATTCGCCAGTACAGAGCCGTCACCCACACGTGGTATACCGCGAAGCAGCAGTGTACCCAGCTTCACCAGCACACGATGAAGACACGGAGCAGACTGATGAGCGACTGCATCACCACCAGGGGATCAGCAGGCAGCAGCTGATTAACAGCCCCTGTCCAATATGCGGGGACAAGATCAGCGGGTTCCACTACGGGATCTTCTCGTGCGAATCGTGCAAGGGTTTCTTCAAGCGCACGGTACAGAACCGCAAGAACTACATGTGCCTGCGCGGGGGCAACTGCCCCGTCACTGTGGCCACGAGGAAGAAGTGCCCAGCCTGCCGGTTTGATAAGTGCCTCGGATGTGGAATGAAATTGGAAGCGATCCGCGAAGACCGAACTCGTGGTGGCCGCTCTACATACCAGTGTTCATACTCTCTATCCGGTGCCGCGTCTACCGGCTCGCTGCTCTCTGCGCACGCGCCAGCTACACTGCGTCACGCGTCTAGCCTCACTTGCGTAAATGGTCCAGCATCATACAGCAGTCGAGGGGAGTCCAGTAGCAGTCGACTCACGCCTGATATACCGCCATTATTACAGGAAATAATGGACGTCGAACACCTCTGGCAGTACAACGAGTCAGAACTGAACCGTCTCGGCAAGTCGAGCGGCAGTCCGTCCGCCAACCCGCTGCTAGCGGCCAGCGGTATCACTGCACAGAACTCTAGTGCAGATTTCCTAGCTGACCTGTGTAATATAGCGGACCATAGACTGTACAAGATTGTAAAGTGGTGCAAGAGCTTGCCGCTGTTTAAGAATATTTCGAACTCTAGTGCAGATTTCCTAGCTGACCTGTGTAATATAGCGGACCATAGACTGTACAAGATTGTAAAGTGGTGCAAGAGCTTGCCGCTGTTTAAGAATATTTCGATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAACTACTGGTGCTGTCGTGCTGCTACCGCGGGGTGAGCACGCCGGGCGAGGTGCGCGTGGGCGGCGGCCGTGGGATCACGCTGCAACAGAGCGCCAAGTACGGTTTAACGCCATGTATCGAACGAATGCTCAGTTTCACCGACCACTTGAGAAGATTGCGGGTAGATCGATACGAATATGTCGCGCTTAAAGTCATCGTACTACTCACTTCAGATGCGCCAGAACTGCGTGAAGCGGAGAAAGTGCGAGCATCCCAAGAGAAAGCTTTAGCTGCGCTACAAGCCTACACAGCAACACACTCGCCCGACACGCCTGCTAAGTTCGGCGAGCTGCTGCTGCGCATTCCTGAGCTGCAAAGGACCTGCCAGTTCTTCATGCAAGTCGGCAAAGAAATGATGAATCCAACGAACAAGAAAGACGGTGAGTCGCCGAGTTTCAACCTGCTAATGGAACTTCTGAGAGGTGACCATTAA
Protein Sequence
MNAMNSEGEAVKVEGGRISVTTISMPGPNTSSGQFSYSSSGIRISVSSDPHDEDSTDAEISKIDFTQHPSEVNMRNKKKRSSGCDGPLEQERPMSWEGELSDHEMVIDTSVNNDETSNLDLQSSRDSIDTLRNVTIKSETVKTEPFQSLDDDRVLDLKYAPLQPHQRSLSMNRISVLTDSTSLSLARRPSSPTSSAKSLALSDQYEHMSHMASGMTEVQNLTIKKETQLNELKCEPLGMEKLLGAHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPSRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQSRHPHVVYREAAVYPASPAHDEDTEQTDERLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHAPATLRHASSLTCVNGPASYSSRGESSSSRLTPDIPPLLQEIMDVEHLWQYNESELNRLGKSSGSPSANPLLAASGITAQNSSADFLADLCNIADHRLYKIVKWCKSLPLFKNISNSSADFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLQQSAKYGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTATHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMMNPTNKKDGESPSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00985246;
90% Identity
iTF_01562088;
80% Identity
iTF_00358729;