Ccro019432.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- sip1
- Assembly
- GCA_905220415.1
- Location
- HG991978.1:2359164-2371740[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1e-32 2.5e-28 99.8 0.6 6 171 369 522 364 535 0.93 2 2 2.3e-28 2.8e-24 86.6 3.3 143 275 536 665 528 665 0.94
Sequence Information
- Coding Sequence
- ATGTCAGACGACGAAGTTATACGTTTCGAAATTACTGACCACGATCTGGACAATGAATTTAATCCGAACAGAAGTAGGAAAAATAAAAGAGAACAGCAAATATATGGTGTCTGGGCGAAAGATAGTGATGAGGAAGACAATGAAGATAATATTAGGAAGAGAACTAGGAAGCCGAAAGACTTCTCTGCTCCAATCGGCTTTGTTGCTGGCGGTGTGCAACAGGCTGGAAAGAAGAAAGAAAACAAACAAGAACTAGAATCTGCCGAACCATCGGTGTCACAAATAAATCTCAATGACAGTTCTGATGAGGAAGTTAGTAATCCTGCGGAGAGTGAAACCGCGGGGATACGTCGTGCTGGGCAGGGCATGCGGCCTGCAAACCTTGGTGGCAATGTGGGCTCTTGGGAGAAACATACTAAGGGGATTGGAGCGAAGCTGCTGTTACAGATGGGTTACCAACCTGGTAAAGGTCTTGGCAAGGATCTGCAGGGTATATCGGCTCCAGTCGAAGCTACACTGCGCAAAGGGAGGGGAGCTATCGGAGCGTATGGGCCTGAGAAAGCTGCGATGAAAATAAAGAAAGATGAAGAGCGACGTCAAAAAGAGGAAGCGGAAAAGGAAAAAGCGGCGACACCGAAGGCGTACAACTGGAAGAAATCTCACAAGGGTCGCTATTTCTACAGGGACGCGGCGGACGTCATACAAGAGGGTAAACCCTCGATACATACAGCTAGCAGTAGCGAACTATCATCGGTACCGGTGATAGACCTGACGGGTCGTGAGAAACGCGTACTAAGCGGTTACCACGCACTGCGCGCAGCCGCGCCGCGCTACGAGCACGAGCCGAGGCGTGAATGTACCAACTTTGCAGTACCGGCCTTAACACACAACTTGCAAGTCGCCGTGGAGAATTGTGAACAGGAAATAATCGACAATGCACGTTCACTGCAACGAACAGGTGATCAGATGATCGAGCTGCAGCGAGAAGTTGAACAATTCAATCAACTGATCCAAGAGCAAGATATAGTGATTGATAAATTGGAATGGGTATTAAAGAGTGTCGAAAGGTTAAATAAACCTGATATCTCTTTGGAGATGGCTTACGAGACTTTGGTTGAAACTAAGGAAAAATCACCGGTGGAATACGAACTGTTTGGTCTAGGTACGATAGGCGCGCACGTAGTGAACCCACTATTCAGTTGTTTGCTGGCCAAGTGGGATCCGCTGAGGTATCCCACGGAAAATGTAGATACATTCCTCAAGTGGAAACAGGTGCTTACAGAGGATTCGTACACTATGCTTCTGTGGCAACACTTCTTGCCGAAAATCACTAGCGCTTCTGAGGTGTGGAACCCCCGTGTCCCGGAGCCGATGCTGCGCGTGTTCTCGGCGTGGGCGGATGCGTGTGGGGGCTGGGTGGTCGCGGGCTGCGTCACCAAGTGCGTGGCGCCGCGGCTGCTCTCCGCCGTGCGCTCGTGGGACCCCACCAGCGACACGCAGCCGCTGCACGACGACACGCAGCCGCTGCACGAGTGGGTGCTGCCCTGGCACCCGCTGGCCGGTGAGTGCACGCACACACACACACACACACACACAAACACATCGCACTCGTGGGACTCCACCAGCGACACGCAGCCGCTGCACGAGTGGGTGCTGCCCTGGCACCCGCTGGCCGGTGAAGCGTTAAGCGCCAGCGTGTACCCTTTAATTCGATCACGGCTTGCCAGCGCTCTAGCGGCCTGGCACCCAGCAGACGCGTCAGCCAAGCCGTTGCTGGCCGCGTGGCAACAGGCGTGGGGCTCAGCGCTGACCATGATGCTGCACCACCACATTGTGCCCAAGCTGGAGCACTGCTTGCAACACGCGCCGCTCGAGCTCGTGGGGAGGGAGAATACCGCTTGGCTCTGGTGCGTCCAATGGGTGGACTTAGTGGGCGCGCCCACTATAGCAGCACTAGCGGGCCGTGCGCTGTTGCCGCGCTGGCTGGGGGCGCTGGCCGCGTGGCTGAACACCGCGCCGCCGCACGCGACCGTGCTCGCCTCGTACACGGACTTCAAGAAAATGTTCCCGGCCGAAGTGCTCAAAGAGCCAGTTGTTCGTGACGCGTTCCGTAAAGCCCTCGACATGATGAACAGAAGCACAGACATAGATCCCATAGAACCACCCCCACCACCACGCTTCACGATGCCAGAAAACAAACCAGAACCCTCCATCATAATACCAGACGCTCTATCGACCAATACCCTGAAAAGTTTCTCGGAACTTTTGGAATCCAGATGTATGGAAAAAGGCATCACTTTTGTGCCAATGCCTGGAAAAACAAGAGAAGGAAGGCCAATTTATAAGATCGGAGATATGCAGTGCTATGTTATTAGGACGATAATCATGTATTCTGATGATAATGGCAGGAATTTCGCGCCGGTCAGCATGGAGAAACTATTGAGAATGGTTGAGGAATAA
- Protein Sequence
- MSDDEVIRFEITDHDLDNEFNPNRSRKNKREQQIYGVWAKDSDEEDNEDNIRKRTRKPKDFSAPIGFVAGGVQQAGKKKENKQELESAEPSVSQINLNDSSDEEVSNPAESETAGIRRAGQGMRPANLGGNVGSWEKHTKGIGAKLLLQMGYQPGKGLGKDLQGISAPVEATLRKGRGAIGAYGPEKAAMKIKKDEERRQKEEAEKEKAATPKAYNWKKSHKGRYFYRDAADVIQEGKPSIHTASSSELSSVPVIDLTGREKRVLSGYHALRAAAPRYEHEPRRECTNFAVPALTHNLQVAVENCEQEIIDNARSLQRTGDQMIELQREVEQFNQLIQEQDIVIDKLEWVLKSVERLNKPDISLEMAYETLVETKEKSPVEYELFGLGTIGAHVVNPLFSCLLAKWDPLRYPTENVDTFLKWKQVLTEDSYTMLLWQHFLPKITSASEVWNPRVPEPMLRVFSAWADACGGWVVAGCVTKCVAPRLLSAVRSWDPTSDTQPLHDDTQPLHEWVLPWHPLAGECTHTHTHTHTNTSHSWDSTSDTQPLHEWVLPWHPLAGEALSASVYPLIRSRLASALAAWHPADASAKPLLAAWQQAWGSALTMMLHHHIVPKLEHCLQHAPLELVGRENTAWLWCVQWVDLVGAPTIAALAGRALLPRWLGALAAWLNTAPPHATVLASYTDFKKMFPAEVLKEPVVRDAFRKALDMMNRSTDIDPIEPPPPPRFTMPENKPEPSIIIPDALSTNTLKSFSELLESRCMEKGITFVPMPGKTREGRPIYKIGDMQCYVIRTIIMYSDDNGRNFAPVSMEKLLRMVEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00357521;
- 90% Identity
- iTF_00357521;
- 80% Identity
- -