Basic Information

Insect: Colias croceus
Gene Symbol: clz9
Assembly: GCA_905220415.1
Location: HG991967.1:1935769-1938408[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4e-07 0.00013 22.0 0.0 2 35 23 55 22 63 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4e-07	0.00013	22.0	0.0	2	35	23	55	22	63	0.88

Sequence Information

Coding Sequence: ATGCCTCCATCGAAACCAAATACTAAAAAAATCGGTCTCGTGAAAAGAAAATTGTTCCAGTACTCACCGCATAAAATATCATTAGCATTGAACGCAATAAAGAATGGGATGCCCGTTGCCACTGCTAGTAGAGATTTTAATGTACCTCGAACGACATTGCGTCACAAAATTTCTGGAAAAGCACCTGAAACTTCTGGACATGTAGGGCCCCAGTCAGTTCTTGGAAGACAAATAGAAAACGAACTTGTCATATGGATCAAAGATTGCGCTCGCGCTGGATTTCCTATTAACAAGGAAGGTTTACTGGATTCTGTTAAGAAAATTGTTGTGAAGGGCAAAATTGCTACACCTTTTATAAATGATAGACCTTCAAGATCCTGGTTCGATGGATTTATGGCGAGACATCCTGATTTGAGCCAAAAACATGCCGAGTATATTAATAAAGCTCGTGCCTTAATAACTGAAGAGAAAATTCGGAACTGGTTCCAAGAAATTTCTTCATTGCTCGGTGATGAAAATTTAAAGATTTTAGAAAACCCTAGGAGAGTTTGGAACTGTGATGAAACAGCTTTTTTTCTAGCTCCAAAAGGATCTCTTGTGTTAGCTGAAAAGGGACAACATGTTTACGATACGTCAAAAAACAGCGATAAAGAAAATATAACTACCCTATTTACTGTCAATGCCGCTGGTGAATATGCACCTCCTTTAACTATTTACAAATACAAAAGAATGAGTTCTGAAGTTCTTGACAATGCACCAAGTGGATGGGGGGTTGGTAAAACCGATAAAGGATGGATGACAGGCGAATCTTTCTATGAATATGTGGCAAACGTCTTCATTCCTTATCTGAAAGAAAAAGAAATTGAATTACCAATAATATTGTTTCTTGACGGCCACAAGTCCCATCTGACTATGCATCTTAGCGAATTGTGTAGGGAGAATGGAATAATAGTTATTGCCCTTGTCCCAAATACAACTCATATGTTGCAACCTTTGGACGTTGCTGTATTTTACCCATTGAAACAGAATTGGCGTCAGATGGTCAAAAAGTGGCGCATTGAAAACGATGGACAAGAAATCACAAAATTTACTTTGCCATCTGCTCTGCAAAGTTTACTCCTTGATAACAAAGATAAGTTTGCAAAAAATGTGCAAGCAGGATTTCAGACATGTGGTTTATTTCCATTTGGTGCTGACTTTGTTAATTACAAGAGAATTATAAAAGATAGAGATCCAAAAACTATTGAAAACCGACACGAAGTTACTATTTCTGAATCCAGCTACATATCATACCTGGAAAGTAAAATCGTCCCAAACATACTGAAAGACTTTTATACTACATTTAATTCTGGTAAAGACTGGGAAGGCAACAAAGAAGCATCAATGTTATATGATATATGGCTAGCTTTCAAAAATGATACCACTGCTACAATGTCACATCCAACCTTGGCATCACATGATATTGGAAATGCCGTCAGAGAAATTTCTTCACCATCAATTATCAGGGATGATAATATATTAAGGAACCAAGAGTACATTGAAGACTTAACTGACATGGAAAACGAAGATAGCTCCACCAGTACTTCTCTTGCAGCAAAAGAGCCATCAGAAGGGCCAGGTCCATCTTTCGTCTATACTGCTATCAACATTCAAGACTCGGACAATATAAATAACTCCCACCAAATTTCGGCTGCGGAAAAAGAACCATCAGAAGAGCCAGATCTATCTTCGGGCCAGTCTGTTGCAGTTGTCTCTTTACAATCTCATCAAGTGAATAAAATACTAATTAAAACCACATCCTCAAAGGATTTAATAATCTGTAATCAAAAGGATATCACATCAGAAGAACCAGGTCCATCTTCTAGCTATTCTGATACGGATGTTCTAGACTCACAAAACAAACCCAACCCCTGCAAAACCTGCCTTACAGCTAAATCCCCTGCAATGATTGCCCTTCAAACAGCTAGAGATTTAGTGAAAGATTGTGTTTTGTATCCAGGAAAAGTAATACCAAAAAATACTAGAAAAGCAATGTATGTCCCTTCCGTTATCACGTCGAATAAATGGCGGGATATTATGAAGGCAGCTGAAAAAGAGAAATCAGAAAAACTATCTAAGAAAAAAAATAAACCAGGAAATAAACAGATGAAGAAGAAAGTGTGCAGAATAATCGCATCTTCTGAAGAAAGTAGTGATGATAGTGATTCAAATTCTAAAAAAGTGATAGAAGAAAACAAAATGCCAAAAAAAGATCTAAAACGAAAAAGAAAACGTTCTGAAAGACTGATGACAGATAATGATGACACAAGTTCCGAATCAGCGTTACCTCTAATTCAGTTACCAAAGTCAGGAAACATTAAAATGTGCGATGAAAACTTAAAAGTAGGCTCAAACGTCATTGTTAAATATGAAGGTGAATATTTCCCTGGAAGAGTCGAGAACAAAGATAAAGGATGTTATGAAATAAGCACAATGGTATTATCTACAAATAATACATTCCGATGGCCAGAAAAAACTGATAAAATTTGGTATGGAATTAATGAAATTGTGGAAATTATAAAGTCACCTATTAAAGTTAATAACAGAGGCTTCTTTAAAGTTACTGAGATGGAAAAATTTTTGCCCAACATTTATTTATAG
Protein Sequence: MPPSKPNTKKIGLVKRKLFQYSPHKISLALNAIKNGMPVATASRDFNVPRTTLRHKISGKAPETSGHVGPQSVLGRQIENELVIWIKDCARAGFPINKEGLLDSVKKIVVKGKIATPFINDRPSRSWFDGFMARHPDLSQKHAEYINKARALITEEKIRNWFQEISSLLGDENLKILENPRRVWNCDETAFFLAPKGSLVLAEKGQHVYDTSKNSDKENITTLFTVNAAGEYAPPLTIYKYKRMSSEVLDNAPSGWGVGKTDKGWMTGESFYEYVANVFIPYLKEKEIELPIILFLDGHKSHLTMHLSELCRENGIIVIALVPNTTHMLQPLDVAVFYPLKQNWRQMVKKWRIENDGQEITKFTLPSALQSLLLDNKDKFAKNVQAGFQTCGLFPFGADFVNYKRIIKDRDPKTIENRHEVTISESSYISYLESKIVPNILKDFYTTFNSGKDWEGNKEASMLYDIWLAFKNDTTATMSHPTLASHDIGNAVREISSPSIIRDDNILRNQEYIEDLTDMENEDSSTSTSLAAKEPSEGPGPSFVYTAINIQDSDNINNSHQISAAEKEPSEEPDLSSGQSVAVVSLQSHQVNKILIKTTSSKDLIICNQKDITSEEPGPSSSYSDTDVLDSQNKPNPCKTCLTAKSPAMIALQTARDLVKDCVLYPGKVIPKNTRKAMYVPSVITSNKWRDIMKAAEKEKSEKLSKKKNKPGNKQMKKKVCRIIASSEESSDDSDSNSKKVIEENKMPKKDLKRKRKRSERLMTDNDDTSSESALPLIQLPKSGNIKMCDENLKVGSNVIVKYEGEYFPGRVENKDKGCYEISTMVLSTNNTFRWPEKTDKIWYGINEIVEIIKSPIKVNNRGFFKVTEMEKFLPNIYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00634418; iTF_00634416; iTF_00634417; iTF_00720217; iTF_00720218; iTF_00720219; iTF_00720220; iTF_00720221; iTF_00720222; iTF_00720223; iTF_00276352;
90% Identity: iTF_00634416;
80% Identity: -