Ccro018322.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991975.1:5074584-5080183[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-07 4.2e-05 23.6 0.0 4 34 168 198 167 206 0.90
Sequence Information
- Coding Sequence
- ATGGATTTGGATTTAGTAAAACATGAAAATGTGGAGTTATTAGGACGCTGTAAGTGTTGTTTGGATGACGTTAATCTCAAATCTTTATGGGAAGAATATGATAATGATGGTCAGGTAGAAGTTTATGGCGCGATGGTTGAAGAATGCTATTCGTTGAATTGGGAAAGAAAGGATGGAAATGAATTTATATGCAGTGCATGCATAGTGCGTTTGCGGGATGCTCTTAACTTCAAAAGGGAGATTATTGCATCTGACCAAGTGCTTCAGCAAGTGCAATTCGAATTCAAAAATAATATTAGTGTGGATGTCAAAGTTGAAGTTGAATCTTCAGAGGACATTGATGAATATCATGATGTAGAATACTTAGAGTTAGAAGGTGATAATTCTGCTACAACTGAAGCAAATGCGACTGAGATAGCTACAGAACTGCCTAGTCGTAAATGGCCAAAAAAGAGAAAAGGTGCAGATCGTTTGAAAGTTTACAAAAAATACACGCAGCTTGAGCTTAGAGAAGCTATGGACGCAGTGAAAAGTGGCAAGATGACCCGCACAGAAGCTTCTGAAATTTACAACATTCCTAGGAATACTATCGCGAACAATTTGAATAAATACAATTCATTAATTGAAACTCATAATGATTCCACGGAGGAAACTTCCAATAAGGAGAAGAATTTTAAGCTCATTGAAGAGATTAAAGCACTGCTAACATTAACAAATGCCATACCATTCAAAACCAAAACCGCAAAATACTATTGTGCATATTGTTCTACAGATGGACCTATGTTTGAAGATGGTGATGAATTACGAATTCATACCATAAATGAACACAGTGAACATAGAACATACAATGTTGACCATTTCATGAGACCTTACTGGCTCAATGAAATACTCAAACTCGATGTTGATAACCTCGCATGCAATTTATGTGAAACAAAGTTGCCAGACTGGAATGGAATGTTCCAGCACTTTTCTAATGAACACGAAATTGAATTTGATGAAGCCTATACAAGAGTTGTTCCATATATAATAAGCGATAACATCAGATGTGTATTATGTCACGAAGCTTTTAATAATTTCCATCAGCTAGATGGCCATATGAATGCCCATTACAATAACTATATATGTTACGAATGCGGCGATACATTTGTAGCGTCCAGCAGATTAGAAAAACATGTTCAAGTGCATAGTAAGGGAAAATTTCCATGTGATGAATGCGGTAAAGTGTTTTCACTGCAAAAGTATCGAGTGAAGCATACCAATTTAGTACATCGACAGAATGTATTGAAGTGTCAGTTTTGTCCTGAAAAATTCAGCACTGCAGTGCTGCGACAATTGCATCATGTTGAAAAGCATAAAGATCAAATTAAGGAATATACATGTGAGTTCTGCGGTACGGTGTTCAATTATAAGCCAAAATTCATAAAACATTTGCAAAGGAAGCACAGTATTGAGAAGAACAATAAGTGTGATGTGTGTGATAAGTCATTTATTAAAAAATATGAATTACGTCTCCACATGTTGCGACACAAGCAAAATAAGAAATATGTGTGTACTGTGTGTGGTGAAGGTTATAGGAGAAAAGCTAATTTTAACAATCATTTTAAAATTCATCAGAAAGAAAATGTTGAAATTACATTAAATGAAGACCAAGAACAAATTACTTTTAAAGAAGAGGAACAAATTGAGTAA
- Protein Sequence
- MDLDLVKHENVELLGRCKCCLDDVNLKSLWEEYDNDGQVEVYGAMVEECYSLNWERKDGNEFICSACIVRLRDALNFKREIIASDQVLQQVQFEFKNNISVDVKVEVESSEDIDEYHDVEYLELEGDNSATTEANATEIATELPSRKWPKKRKGADRLKVYKKYTQLELREAMDAVKSGKMTRTEASEIYNIPRNTIANNLNKYNSLIETHNDSTEETSNKEKNFKLIEEIKALLTLTNAIPFKTKTAKYYCAYCSTDGPMFEDGDELRIHTINEHSEHRTYNVDHFMRPYWLNEILKLDVDNLACNLCETKLPDWNGMFQHFSNEHEIEFDEAYTRVVPYIISDNIRCVLCHEAFNNFHQLDGHMNAHYNNYICYECGDTFVASSRLEKHVQVHSKGKFPCDECGKVFSLQKYRVKHTNLVHRQNVLKCQFCPEKFSTAVLRQLHHVEKHKDQIKEYTCEFCGTVFNYKPKFIKHLQRKHSIEKNNKCDVCDKSFIKKYELRLHMLRHKQNKKYVCTVCGEGYRRKANFNNHFKIHQKENVEITLNEDQEQITFKEEEQIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358981; iTF_00357420; iTF_01562316; iTF_01562317; iTF_00358006; iTF_01561950; iTF_01561951;
- 90% Identity
- iTF_00358981; iTF_00358006; iTF_00357420;
- 80% Identity
- iTF_00358981;