Basic Information

Insect: Colias croceus
Gene Symbol: -
Assembly: GCA_905220415.1
Location: HG991977.1:4012541-4015462[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 6.3e-11 2e-08 34.2 0.0 1 38 7 45 7 50 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	6.3e-11	2e-08	34.2	0.0	1	38	7	45	7	50	0.90

Sequence Information

Coding Sequence: ATGTCAAACAAAAAGTACTCCAACGAGGACCTCGCCAACGCTTTAGAGGAAATAAAAAATGGCACCATGACAATATATCGTGCATCTAAGGTATATAACATACCCAATCAGACCTTGCATGATAAAATTAAAAAAAAATATAAAAAACAAGAGTCAGCAGGAGCTCCAACAGTCCTGTCATCCGCAGAAGAAGATTTATTAGTAAAATGGATATTGCATATGGCGGAAATTGGTTTCCCAGTTACAAAAGACCAACTGCTACACTCGGTAGCTAAATTACTGATAGCATTGAAGCGTCAAAATCCATTTAAGGACGGAGTTCCTGGCAGACATTGGTACGAGGCCTTTCTGAAAAGAAACCCAATGATAAGCAAGAGAGTATGTCAAGCATTGACTACTGCCCGTGTAAACGCTACTGAAGAAAAAATAAGGGGCTGGTTTCAACGAGTCCGAAAATATTTCGAAGAGAACAATCTCATGGCTGTGTTGGAAGACCCCGCACGCGTGTTCAACTGCGATGAGTCTGCCTTTTTTTTGTGTCCGAAAGGTCAACCAGTCCTTGCCAGAAAGGGGGTGAAAAATGTTCACTGCCGATCTGGTAATGACGATAAAGAAAATCTAACGCTCTGTCTCGGCGCGTCAGCTGACGGGAAACTAATGCCAGTATTAGCATTATTTCCATATAAAAGGATACCACAAAATATATTGATGAAATATCCTAAGGATTGGGCCATCGGACGTACTGACTCGGGATGGATGACATCAGAGGGATTTTATGAGTACGTGGCCAATCAATTTGAGCCATTTTTGACGAAAGAAAATATCACAAGACCTGTAGCTTTGTTCCTGGATGGACACGTCTCTCATCTGTCGCTCCCAGTATGCGAATTTTGTAAAGAAAAAAACATCATATTGATAGCTCTGTTGCCTAGCGCCACACATGCTTTACAACCTATGGACGTTGCAGTATTTCACAGCCTCAAAAACGCTTGGAGTAAAGCTGTACATACTTGGAGGATGGAGAACAATGGTACACGCTTGAAGCGAGAAGATTTTGGTCCCGTGCTTGAAAAAGCCATCAAAACGACTCTGCGAGCAGAAATTATTCAAAATGGCTTTCGAAAGGCCGGCCTGTATCCCTTCGATGAAAATGCAGTTAATTATGAAAAAATTCCTAAATCTTCTGCGGCAATTGCGTCAAGTTCTGGCACAAGTACACCTACAAGTTTGAGCTCTTTAGAAAGCAGCAAGCAGTTACAATCTAAAGATTTTATTAAGTGGTTCGAGATTAATTTAGATGCTCATAAATTAAATGAGTTCCGGCAATGTTCTGGAGAATGGACAGGCAATGTAAAGGACGACAGTCTGTACTATTTCTGGAAGCAGACCTGCACGAGTCATACACCAACACCAGATTCAATGACTCTAGGCAACACCACTCTTGAGGAAAATGACTGTACGTTAGCCGATCTTGACCTTAATTGGATCAATGATGACACGATAGTTGAATCGGCTCTTCTTAACGAGATAACTTTGATTAGTTCTTTGCCCTGTTCTACTCCTAAAAGTCCAAGTTGTATTGAGACCATTACTTTTCAAGAGACGCAACAAGAGTTAGTAACAAATTCTAAAGCGGCAGGTGATTTGCTAGATGGTTCCAGCAATATAATCGGTAATATATCGAAAATTTCCAGGCAGGACAACGTAAGTAATGTTCCCCTAATAATAGTACCGCCCCCCGAAACAATACATCTCACACAAGAAGCTATTCTGGAAGAATCGTCAGTTGTCATACAACAAAATGACCCTGGTGATGTTCCTACAATCATACCTCTCAAAGAAAAAGTCGCAAATAGAGACAACGATAAATTATTTAAGCCATCAGGATCATTACCAACCAACAATTCAACTTTTTCTGTGACCTCACCAGTTCCTCAAGAAAGATTCTCACCACCTAATGAAACGGATAGAAAAGTACAAAATATCAAACCTATCATTTCCAAAGAAGCACTAACTTCTCAAACAGCATCTGTGATACAAAATAATATAAATATAGCTGCTGATAAACACGAAAAATGCGTAACCCCAAACAATCAGACTAAAAAAAAGATACTTACTAGATCTGCTGAGGATACATTGGAGTCGTCTTCGATTTCGACGTCCCAGAATAATAAAAAATATGAAGATAGTTCAACCAATATTCAGAATTCTGTTACTGAACCAAATTCCCCTACTCAAGATCAAAGCGAAAATTCTCAAAATTGCAAGAAATCCGCATTTCCCACACCCTTCAAAAATGCTTTGTTGTGGCCAGAAACTCCGTCGAACAGTAAAGGTAAAAAACTTATTAAAAAAAAACTTGCTCCCATTATAGGAACTGCTGATGAATACATCGCATATGAAAGGAAGCTTAAAGAAGAAAAAGAAGACAAGCTAAAGCAAAAAGAAATAAGAAAACAAGACCGTGAAAATAAAGCCAAAGAAAAAATAAAGGCGACGAACATAGACAAAAGAAACAAAAAGAAGTCATCCAAAGTTCCAGATCAAATTAATGAACCTGGGCCTTCGAGAACAACAACAAAAAATAGAGAAAGTGAAACACTAGCCATAGTTTCAGATGAAAGGATTGATTGTAACTCGTCGAAAATAACTCCAGGAGATTATGTTGTAATTATTTATGAAGGAGAAAATTTTCCGGGTATAGTAATGGAAGTTATACATGAAGCATCTGAAATAAAATATAAAATAAAAACTATGACCATGAGCGGTTTTGAGCCAAGTGGGCGAGTGAACTGGCGCTGGCCTGAAAAAGATGACATTTTAATCTACGACGCTAAAGAAGTTCTTAAAAAAATTAAGGCTCCTATGGCGGTTAATAAAAGAGGCGTATTTTCTATTCAAAGTTTAGACTGTGATGATTAA
Protein Sequence: MSNKKYSNEDLANALEEIKNGTMTIYRASKVYNIPNQTLHDKIKKKYKKQESAGAPTVLSSAEEDLLVKWILHMAEIGFPVTKDQLLHSVAKLLIALKRQNPFKDGVPGRHWYEAFLKRNPMISKRVCQALTTARVNATEEKIRGWFQRVRKYFEENNLMAVLEDPARVFNCDESAFFLCPKGQPVLARKGVKNVHCRSGNDDKENLTLCLGASADGKLMPVLALFPYKRIPQNILMKYPKDWAIGRTDSGWMTSEGFYEYVANQFEPFLTKENITRPVALFLDGHVSHLSLPVCEFCKEKNIILIALLPSATHALQPMDVAVFHSLKNAWSKAVHTWRMENNGTRLKREDFGPVLEKAIKTTLRAEIIQNGFRKAGLYPFDENAVNYEKIPKSSAAIASSSGTSTPTSLSSLESSKQLQSKDFIKWFEINLDAHKLNEFRQCSGEWTGNVKDDSLYYFWKQTCTSHTPTPDSMTLGNTTLEENDCTLADLDLNWINDDTIVESALLNEITLISSLPCSTPKSPSCIETITFQETQQELVTNSKAAGDLLDGSSNIIGNISKISRQDNVSNVPLIIVPPPETIHLTQEAILEESSVVIQQNDPGDVPTIIPLKEKVANRDNDKLFKPSGSLPTNNSTFSVTSPVPQERFSPPNETDRKVQNIKPIISKEALTSQTASVIQNNINIAADKHEKCVTPNNQTKKKILTRSAEDTLESSSISTSQNNKKYEDSSTNIQNSVTEPNSPTQDQSENSQNCKKSAFPTPFKNALLWPETPSNSKGKKLIKKKLAPIIGTADEYIAYERKLKEEKEDKLKQKEIRKQDRENKAKEKIKATNIDKRNKKKSSKVPDQINEPGPSRTTTKNRESETLAIVSDERIDCNSSKITPGDYVVIIYEGENFPGIVMEVIHEASEIKYKIKTMTMSGFEPSGRVNWRWPEKDDILIYDAKEVLKKIKAPMAVNKRGVFSIQSLDCDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01338535;
90% Identity: iTF_00358466; iTF_00896705; iTF_00710945; iTF_01338535; iTF_01338536; iTF_01280140; iTF_01280141; iTF_01338544; iTF_01020177; iTF_01338545; iTF_01338546; iTF_01338534; iTF_00751979; iTF_00751978; iTF_00896704;
80% Identity: -