Cbeh028562.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000028.1:6555942-6574393[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.8 1.8e+02 3.8 0.1 5 23 389 407 388 407 0.94 2 11 0.00017 0.017 16.5 3.3 1 23 424 446 424 446 0.98 3 11 1.1e-05 0.0011 20.2 1.2 1 23 452 474 452 474 0.98 4 11 8.4e-06 0.0008 20.6 6.6 1 23 481 503 481 503 0.98 5 11 1.1e-05 0.001 20.3 0.1 1 23 509 531 509 531 0.93 6 11 6e-06 0.00057 21.1 0.1 1 23 537 559 537 559 0.98 7 11 1e-05 0.00096 20.4 2.0 1 23 565 588 565 588 0.96 8 11 0.00044 0.043 15.2 6.6 1 23 594 617 594 617 0.97 9 11 0.00014 0.013 16.8 0.5 2 23 624 645 623 645 0.97 10 11 0.00022 0.022 16.1 0.5 1 23 651 673 651 673 0.96 11 11 0.0066 0.64 11.5 1.7 1 23 679 703 679 703 0.92
Sequence Information
- Coding Sequence
- ATGGCAGAGCATTGTTACATTTGTAATAAGCAAGATGGAGGGGTGGAGAAAACAAAGATTAACATATTTGAAACCAAGACTCCTATGTCGGAAAGTAGAATATTTGAGCTGTTATTAGAAATATCGGGAAAGGAAGTGCCACAGGAATGTAAGGAAAAGAATAATTTGTGCGCAAAATGCTATAAATCACTACTCGAATATGATTATCTGCTAGCTagACTTAACGAAATGAAAACATCAATGCGCGACAACATACACAAATCGGAACAGTTGCGAAACATCAAAAAGGAATTGATAGTAGACGACGCAAAAGCAAAAGAGAAAAGTAATATAAAGCTAGTATTGCCTGCGTCTAAATTGCAGCCTCTGCCGCCCGGGTTTGATTTGAGAGTCAAAACTTCAAGTAGTTGGAGTAATGTGACTACTACTAATATTCCTAAAAGTATGCCGTCAGTATCAAGTTTACCGAACTTAACAGAAACCACAGACGCAACAGAAACAACATCAACAATTAAAACTGAAATGGATATAAATCAATTATCAAGCATACCAAGAGTGATTATAGAACCTGAGACGATCGCAACACTATTAAATAAAGGCAATTTCACCCTAAATGGTTTAACCAAAGGGTATGTTAGAGTGACGAATGAACAAAAAGATGAGGAAAATCATGAAGAGAAACCTATGGAGATTGATGAAGACGCAGTTGTAATAGAGAGTGAAAATGGTCCCATAATAGGAGTGGTGTCGGGGCAAAAGTTTATATACGGAGATAACGAGATATCATTGATCGTGCCCCATGATAACGATAGCTTGGACAATAACGATGATCAagATTCAAACTCAGGATCGCACATAGAGCTCCAAATGTCAGGCGATGAAGAAACAGCTAATGCTATAATAGCCGCTGCAAATGAACAAGgTGCCTTCATAAAAGTGGATTCCGGTGAAATGTATGAAGTGAAATCCGTTGAGAGTAAAATCGGAGATAGTAGCCCTGATAGTGAGATGCCAataCAAATGGTGGAACAGGATGGTGATAAATTTAAATGTCTGCTGTGCGAGAAAAGTTCCAAAGCAGGTTCTGAGCCAGAATTGTTGGACGATGCAGTCGCAATGATGAAACACTTGAAATCAGTGCACGGAGCGAGATTGTATATATGTCAGTGTGGTGTCATGTTGAGACGGAGGGCTGATTATGTACAGCATATTGAACAACACGCGGAGAAATCAAATCAAATAGTACAACCTACTGACAAGAGCAAAACCCACGAATGTAACGTGTGTAAGAAGAAATTCAGTTCACGGTTACTGCTAAAcgaacacacaaacacacacacaggCAAGCGTCCATACCCTTGTGAAATTTGCAATAAGTCCTTTGCGTCGAGATATACGCAGCAGTCACATTTGAAAACTCATCTTGAACGTCCACGTCCCTTCAAATGCAATCAGTGTGGAAAATCGTTTTTCACACAACACAATTTGAATCATCACGAGAAAATACATTCAGGAACTAAAGATTTCGTGTGCAATGTTTGTGGCAAAGCGTTTGGCACTCAACACAATTTAGAAGTACATGGTGTAGTACATTCTGGCAAGAAGCCCTTCGTTTGCACGGTTTGTGAAAAGGCATTCGCAAGACGGGCCGAGGTTAGAGATCATATGCGTATACATACTGGCGAGCGTCCGTTCGAGTGCGAAACGTGTGGAGCTCGTTTCTCGCAGCGCTCGAACCTGCACTCGCACCGGCGCGCCACACACTTGGACGACAAGCGGCACCAGTGTACACACTGCCCTAAACGGTTCAAGCGGCGCCGTTTGCTAGACTACCACATAAAGTCGACTCACACAGGTGAGAGGCCGCTCAAGTGCGAAGTGTGTGCCGCTACATTCGTGTATCCGGAGCATTATAAGAAACATATAAGGATACATAGCGGCGAGAAACCGTATATTTGTGAGGTGTGCGGCAAGGGCTTCAACTCGCGCGACAACCGCAACATGCACCGCTTCGTGCACTCGGACCGCAAACCGTACGAGTGTGTGGCGTGTGGGGCCGGCTTCATGCGGCGACACCTGCTCACACACCACATGCACACCGCCGGCCACGTGTCGGAGTCGATCGTCATCAACCAACCGCGAATTAGTAAACTTGAAGATAATgaaatTAAAACGCAATCTGTCATCGTGCGGGATAAAAAGAGAGACGACAAACTAATGGAAACCatttaCGAATCGGCAGATGTTTTAGAACTCGATTCTGCTGAGAAAGTTGTGGAATTGGAAGGGGAAGACaatacaacaaaatatataataagtacGGATAAAAAGTTCATGATGTCTGAtggaaaatCATTGAACTTGGTGCCTGAAGTTGAAGGTGAAGAAACAGCCTTGCTAACTATACaGCATTTGGAAGGTGTTGAAAAAATAGAAGGAACTGTCTTGGAGAATATCACAGCGGAGCAACTCGAACAAGCCCATATACTAAGCGACGGCAACAACACAGTTCGTTTAATTCAAATACAACTAGCGGATGGGAACAGCGGTTGGGTAGCTGTCAGTCAATAG
- Protein Sequence
- MAEHCYICNKQDGGVEKTKINIFETKTPMSESRIFELLLEISGKEVPQECKEKNNLCAKCYKSLLEYDYLLARLNEMKTSMRDNIHKSEQLRNIKKELIVDDAKAKEKSNIKLVLPASKLQPLPPGFDLRVKTSSSWSNVTTTNIPKSMPSVSSLPNLTETTDATETTSTIKTEMDINQLSSIPRVIIEPETIATLLNKGNFTLNGLTKGYVRVTNEQKDEENHEEKPMEIDEDAVVIESENGPIIGVVSGQKFIYGDNEISLIVPHDNDSLDNNDDQDSNSGSHIELQMSGDEETANAIIAAANEQGAFIKVDSGEMYEVKSVESKIGDSSPDSEMPIQMVEQDGDKFKCLLCEKSSKAGSEPELLDDAVAMMKHLKSVHGARLYICQCGVMLRRRADYVQHIEQHAEKSNQIVQPTDKSKTHECNVCKKKFSSRLLLNEHTNTHTGKRPYPCEICNKSFASRYTQQSHLKTHLERPRPFKCNQCGKSFFTQHNLNHHEKIHSGTKDFVCNVCGKAFGTQHNLEVHGVVHSGKKPFVCTVCEKAFARRAEVRDHMRIHTGERPFECETCGARFSQRSNLHSHRRATHLDDKRHQCTHCPKRFKRRRLLDYHIKSTHTGERPLKCEVCAATFVYPEHYKKHIRIHSGEKPYICEVCGKGFNSRDNRNMHRFVHSDRKPYECVACGAGFMRRHLLTHHMHTAGHVSESIVINQPRISKLEDNEIKTQSVIVRDKKRDDKLMETIYESADVLELDSAEKVVELEGEDNTTKYIISTDKKFMMSDGKSLNLVPEVEGEETALLTIQHLEGVEKIEGTVLENITAEQLEQAHILSDGNNTVRLIQIQLADGNSGWVAVSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01193796; iTF_00358976;
- 90% Identity
- iTF_00358976;
- 80% Identity
- -