Cbeh006698.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000005.1:13199519-13212036[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-78 1.6e-73 248.5 19.0 1 297 116 402 116 405 0.88 2 2 1.4 2.5e+04 -4.9 9.6 128 170 425 467 409 479 0.49
Sequence Information
- Coding Sequence
- ATGGGCAACACAACCGAAATGGCTACACCTGAAAACACTGATGATGAGAGTGGAGATGCGTTCACAGACGCTGATTTCGGCGATTCCGAAGATGAATTCGTTGAAAGGAAAGATGAAACAGAGTCTTCCAGTATACCTGTTAACGAAACAATCAACACAACTCTAAATAGTGAAAATGACTGTAACGAAAACATTATTAACGGTTTGAACGGTGTAAATAGTGTGGAAAATTGTGAGACGAATGGTAATGTGCAAAATGGTGATGTGGAAACAGTTGATGGACGTAATGATTCCGACGTCGATGATAACCCAATGATCGGTATCCTTGGAGACCAACACAATCATGCGGAGCAGCGGCTAGCTGCGCGGCGGGCTGCCCGGGCTGAGGCGCGCGAGATCCGCATGCGTGAACTGGAACGGCAGCAGAGGGAACAGGAGGACCATGCCGACAAGGCTTACGATATGTATGCAGAGACTGTGGGTCGTCGTGGTGGAACCAGGTTAGCTGCATTGAGCCCAGGCGGTCTGCACTCGCCCAGACGGAGTTCAGAGGATTCTGATGAAGTGCTCAGTATTAAGGATTTGaggCACGAATTAAAAGAAGTAGAAGAGAAGTTCCGCAAAGCGATGATATTGAATGCCCAGTTGGACAACGACAAGGCGGCGCTCGGCTACCAGTTGGAGCTGCTCAAGGATAGGATAGAGGAATTACAGGAAGAATACGCTCAACTACAGCGTGAACACAAAGAGAAGTGCTCCTCACACGAGCGGCTGAAGCGCGAGCACGCGGCACTTGAACGTGAACTGGGCGCGGCGCGTGACGCGGTGCGAGCACGTGACGCGGCCGCTGCTGACGCGGGCTACGCGTTTGTGGACGCGGGGGACACTGCGGCACCGAGTGGGGGGAGCGGGGGGAGTGGGGTGGGAGGGGGGATGCCGGCGCTAGCTCTCGTGTCGCACCAGTCACAGGCGCTGCTGGAGGATGGCGGGGAGGGGACGCTCGACGTCCGGTTGCAGAATCTGGTGAATTCGAAGCAAGCACTAGAATCAGAAGTGCGCAAACTCAAACTACAACTGAACGAGGAACGAGCGGCTCGACAGAATGGAGTCGCATCACATCACGACCAGGACTATGAGAATGAAGTGGAGACGCTGCGCAAGTGCGTGTCGGAGGCGAAGGGGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGGCGGGGGGCGGGGTGGCGCGGCTCGAGGCGCAGCTGCAGCGGCTCCGAGCAGCGCACGACGCGCAGGACGAGCGCGAGCAGGAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGCTAGAGAAGCTCTTAATCGCGTGGAAGAATTGGAGACAGAGAACAGTCACCTCACGAAGCGGCTCGACAAACTGAAGAACGCAAAATCGGCGCTACTTAAAGAACTGTGA
- Protein Sequence
- MGNTTEMATPENTDDESGDAFTDADFGDSEDEFVERKDETESSSIPVNETINTTLNSENDCNENIINGLNGVNSVENCETNGNVQNGDVETVDGRNDSDVDDNPMIGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPGGLHSPRRSSEDSDEVLSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSSHERLKREHAALERELGAARDAVRARDAAAADAGYAFVDAGDTAAPSGGSGGSGVGGGMPALALVSHQSQALLEDGGEGTLDVRLQNLVNSKQALESEVRKLKLQLNEERAARQNGVASHHDQDYENEVETLRKCVSEAKGRAARAEAEAALAGGGVARLEAQLQRLRAAHDAQDEREQELKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -