Cbeh012641.1
Basic Information
- Insect
- Colias behrii
- Gene Symbol
- -
- Assembly
- GCA_029959075.1
- Location
- JARWMB010000011.1:3206239-3208458[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-09 3.2e-07 30.9 0.0 2 36 18 52 17 60 0.90
Sequence Information
- Coding Sequence
- aTGGGCCGAACAAAATTAGATAGATCTGCTAGGAAAAAAGGATCCCACCTACCTGAAGCAATGAAGGCTGCTGTTGATTTACATCTCAACGGTATGAGCTTAAGAAAGGCTGCAAGAGATAGCAACATACCATATCCAACACTGCGAAGATATGTGATAAAATTCAAGACAGACGAGTCTGCTTCGATGGAACCAAATTATAgcgtaaataaaatattcacgGAGGAACAAGAAACAAGTCTTAAGTCTTATATTCTTGATTGTGCTAACAAATTTTATGGTTTAAACACCAAAGAGTGTAGAAAACTCGCCTTGCAAATGGCGGAAATAAATAAACTGGCATACCCTATAAGTTGGAAAGAAAGGGGAATGGCGGGTAGGGACTGGCTACGTGGCTTTAAAAAAAGGCACCCtgatttatctattaaaaaagctGAAGCGTGTAGTATTGCACGAGCCACATCATTCAATCCAACGAATGTCAAATCATTTTTTGACAATCTTCAAGAAGTTTATGGAAGATTTCCTCAATTTGGTGACGGCACGAGGGTTTATAATCTTGATGAAACATCAACCACAACAGTACAACGGCCTGGAAAAGTGTTAGCCCAAAAAGGTAGAAATGTCGCTAAGATTACAAGTGGTGAGCGTGGGATTTTAGTAACTACGTGTTTAATCGTTAATGCAACAGGACAAGCGCTCCCACCAGTCATGATTTTCCCTCGCAAGAAATACGTAGCCCATATGATTAGGGGTGCACCTACTGGAACGTTAGGATTGGTTTCTAAGACAGGTTGGATGAATAGTGATCTTTTTGTTGAAACAATGAAACATTTTGTGAAATTCACAGCTTCTTCGAaagacaatccatcattattaCTTATGGATAACCATGAGAGTCATCTCTCGATCGAAGCACTTGACATTGCAAAGAAATCGGGAGTCACAGTTCTGACGCTGCATCCGCATACTACAAACAAGCTCCAACCGCTTGATGTTGGTGTGAACGGTCCTTTCAAATGCTATTATAACGCTGCTGTTGACTCGTGGCTATTGCGCAACCCAGGGAAACCTATTTCAATATATGATGTAGCTGAATGTGTTGGAGAAGCATACTTGAAAGCTTTAACTCCAATAAACATAACAAACGCTTTCAAAAAATGTGGTATCTTTCCTTTAAATAGAGAGATTTTTTCGGACTTAGACTTTTTACCAAGCAATGTTACAGACAGGCCAGATCCAACACTAAATGAAACGACACCAACAAATATAGATGAGGACGACGCTACAAGTTGTTCTACAAGCCTGTCCGATGTAGCAGAACTGAATGCTGATCAAGACCCGGGTGAATGTAGAACGCCGTCACCATCTCTACTTACTAACTACTTTGACCAAAATACGATTGAACCTAGAAACTTACTTTCACTTTCTCTTGAAGCAACATCTTTTGCAACGATGAAAGACTCTACCACTTCATCCGATGTTGCTAAACCATCTACCAGTATAATAACGCCGGATAGTTCACATCCTTATACTAATTTTGTTTCTCCGAAAGATTTTCGACCCATTTTAAAAGCTGGACCGCGAAATATTAGAAAAGGTGGAAGAAAAGCTGGCAAAAGTATGATCGCCACCGACACGCCAGAAAAAAACGCCCTCGTAGAAAAGAAAAACAAGAAGTCTAAAAAAACAAAGACTGAAGCTGTAAAAAAAGTTACTCATAAATTATTCAAAGGAAAGGAAAATATTTGTAAACGACGAAAGAGAAATGTAACCTCATTTGAATCTTCAGATGAAGATCAAGAAGAATTTCAGGCAAGTGGATCATCTTCTGGTGGtgagattaatgagattatgaGTGATTCTGATGAAGATGAGATAGTTCTGAGAGATGATTTCCCACCACTTAAACGTAGTCCCCGTGAAAATGACTTTGtcataatactttttaattcaaaaaaggaaaaaatatattacgtcGGTAAAATTCTTGAAGTTTTAGATGATGAAGAAGATTGTGATTTTTATGTCTcatacttaaaattaaaaagtaagATTCAACAGAAATTTATTGATCCAAAGGAACCTGATACGGCTGGTGTTAATATTGCGGAAATTAAGTATATTCTGCCATTTcctaaaattgaaaattataaaaatcgaCGTCAAACTACTTACAGATTTCCCGTTGATATCTCTCTTTTAAACATGGGTTATTAA
- Protein Sequence
- MGRTKLDRSARKKGSHLPEAMKAAVDLHLNGMSLRKAARDSNIPYPTLRRYVIKFKTDESASMEPNYSVNKIFTEEQETSLKSYILDCANKFYGLNTKECRKLALQMAEINKLAYPISWKERGMAGRDWLRGFKKRHPDLSIKKAEACSIARATSFNPTNVKSFFDNLQEVYGRFPQFGDGTRVYNLDETSTTTVQRPGKVLAQKGRNVAKITSGERGILVTTCLIVNATGQALPPVMIFPRKKYVAHMIRGAPTGTLGLVSKTGWMNSDLFVETMKHFVKFTASSKDNPSLLLMDNHESHLSIEALDIAKKSGVTVLTLHPHTTNKLQPLDVGVNGPFKCYYNAAVDSWLLRNPGKPISIYDVAECVGEAYLKALTPINITNAFKKCGIFPLNREIFSDLDFLPSNVTDRPDPTLNETTPTNIDEDDATSCSTSLSDVAELNADQDPGECRTPSPSLLTNYFDQNTIEPRNLLSLSLEATSFATMKDSTTSSDVAKPSTSIITPDSSHPYTNFVSPKDFRPILKAGPRNIRKGGRKAGKSMIATDTPEKNALVEKKNKKSKKTKTEAVKKVTHKLFKGKENICKRRKRNVTSFESSDEDQEEFQASGSSSGGEINEIMSDSDEDEIVLRDDFPPLKRSPRENDFVIILFNSKKEKIYYVGKILEVLDDEEDCDFYVSYLKLKSKIQQKFIDPKEPDTAGVNIAEIKYILPFPKIENYKNRRQTTYRFPVDISLLNMGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00685372;
- 90% Identity
- iTF_01264496;
- 80% Identity
- -