Cfla024309.2
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369277.1:921328-962919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00045 0.042 15.7 0.4 2 23 139 160 138 160 0.93 2 12 0.00096 0.09 14.6 2.4 1 23 166 188 166 188 0.96 3 12 0.00023 0.021 16.6 0.6 1 23 282 304 282 304 0.98 4 12 2.5 2.4e+02 3.9 0.1 2 23 311 333 310 333 0.94 5 12 0.001 0.094 14.6 0.0 3 23 387 408 385 408 0.90 6 12 0.001 0.094 14.6 0.0 3 23 429 450 427 450 0.90 7 12 0.015 1.4 10.9 0.6 1 23 461 483 461 484 0.93 8 12 5.1e-05 0.0048 18.6 0.2 1 23 510 532 510 532 0.98 9 12 0.001 0.096 14.6 0.2 1 23 538 560 538 560 0.97 10 12 0.00058 0.054 15.3 0.3 1 23 566 588 566 589 0.95 11 12 0.034 3.2 9.8 0.4 1 23 602 624 602 624 0.97 12 12 0.0042 0.4 12.6 0.1 1 20 782 801 782 804 0.93
Sequence Information
- Coding Sequence
- ATGGATGCTGATGGAGAGGATTACCTCCACTGGGAGGAAGTTGAAATCAAGCACTCCCATGTCCAAGGAGAGAATGTTGGAGGAATGTATTCCCTTGAGAACATACAAGGTGGATCGTATTCCAATATTAAAACTGAAGAAATGAATCAGAACACACACCAGATGGCAGCGGAGAACTTGATGTATTTGTCTCAGGATGTTGTCAGTTTCGCGGAGGCTGAGGAGCTGGACCCCAGTGTTGAGTGTGTCACTGAGGAGGTCATCACTGATGACTGGGTGACCCCAGGGGGACTGGAGAGGATAGAAGTGCCCGTGGAACATTTAGCGAATCCTGTTTCAGATATAAAAGAGGAGAATGATATTGATGTACCATTGCCAACAGACCAAGATGAATACACAGCGATGCGCCCGTGGCCGTGCGACTTCTGCTCGCGGCGATTCCGCAAGAAGGCCTCGCTCATGAACCACATGGTGGCGCATCAGAACGACCGCCCACACGCGTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGCGACCTCATGAACCATCTCAAGGTGCACGCGTTCGTGCCGGACGACGCGTCCGCTGGGGACTACGATGACATGTTGGAGGCTACAAATATAACTAAACCAAAGAAGAAACGTGGaagacggaaaaagaatccagaaccagtggaaGACATCGAGACGTGGGAAAACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGTGTGCGCGAGCCGGCGCCCGCGCCGCTGCCGCCCTCCCCGCCGTCGCCTGCTTCCCCTGAGCCGGAGCCTTCCCCTCCGCCGCCGCCCGCAGACCCCTCCAGACCGTTTGTGTGCAGGCACTGTGGAGTCGGTTTCGCGAGGGAAAAAGCACTTCAGAGTCACTCAAGGATCCACGGCGGGGACTCGCCGGTGGAGTGCGGTGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGGGCTGGCGGCGCACGCGCGCTCGCGCCACCCGCACGCGCCGCCGCGCCCGCGCCACGACCCGCACATAGACCTCATTGACTCCAACTCCGGCGACGACATGGACTACAGACTGTCTCCGGAGTCGAACAGGAGTCGCGGCAGCATGGAGCGCACCGTCATGGACACGCTACGAGGTCCCACTCTCTTCTGCCAGGATTGCGGGGTCGCCTTCCAGAGGGCCGACCTGTTGAGGCGGCACGTCGCCGCTGCGCACAGGAGTCGCGGCAGCATGGAGCGCACCGTCATGGACACGTTACGAGGTCCCACTCTCTTCTGCCAGGATTGCGGGGTCGCTTTCCAGAGGGCCGACCTGTTGAGGCGGCACGTCGCCGCTGCGCACAGCTACAAGCGGCACGACACGGACGGGTCGCACGCGTGCGACGTGTGCGGCGAAACGTGCGAGGACGCCCTGCAGCTGCTTGCGCACGCTGAGATGCACCACCAGCGGCCCACGCCCAGGTTAAAAAAGATGGGTCGAGGTCGCAACAACACGTCGACATCGAATAGTTCGCGGCAGTTCCCTTGCAGAGAATGCGGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGGATCCACACGGGTGAGCGGCCCTACGCGTGCCGGTTCTGCTGGAAGGCGTTCGCGGACGGCGGCACGCTGCGCAAGCACGAGCGTATCCACACGGGCGAAAAGCCGTACGCGTGCGCGGTGTGCCCGCGTGCGTTTAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCACACCACTCCGCGCCCGACAAGCGCGCCAACGGCGGACTGCCGTACTACTGTGTCGTGTGCGGGCGCACGATGCACACGAGCGCGGAGCTGGTGCAGCACCTCATCCAGCACTGCGACGCCAACACGGCGCTCAAGCGACAGCCGCAGACCGGTCCCCGCAAGTACAAGCGACGGCGGAAAATGAAGAGCGAGAGCACGCCGACTGTGGAGTGGTCGCGGTCGCCGTCGCCGGCGCCCGAGTCGCCGCGCCATTCGCCGTCGGCGTCGCCGCTCGCCTCGCCGCCCGCGTCCCCCGCCCCCTCGCCCCCGCCGGGACTGCGCCGCCGCCCGCGGCGTGCCGCCAAGCGCGTGCCGCCGCCGCCGCCGCCACCCCGCCCGCGCATGATACACACCGCGGAGCCTCGACCGCGCACCAAGCAGGTGCGCAGCCGGCGGCCGCCGCGGCACCCGGCGGACGACCTGCGCGCCATCCAGCCGGCGCTGCGCTCACCCTCGCCGGCGTCGCCCGTGCTCTCCCCCTCGCCGACACCCTCCGTGCAAGTCAAGTCCGAGCCCGACGAGCTCGCCTCGGAAGACGGGCCCTTCAAGTGCGAGATGTGCTCGCTGGAGTTCACGCGGCGCGACGCGCTGCTACTCCACGTCCCCGTGCACATATGA
- Protein Sequence
- MDADGEDYLHWEEVEIKHSHVQGENVGGMYSLENIQGGSYSNIKTEEMNQNTHQMAAENLMYLSQDVVSFAEAEELDPSVECVTEEVITDDWVTPGGLERIEVPVEHLANPVSDIKEENDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKASLMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDDASAGDYDDMLEATNITKPKKKRGRRKKNPEPVEDIETWENMTSARTQQWSRRVREPAPAPLPPSPPSPASPEPEPSPPPPPADPSRPFVCRHCGVGFAREKALQSHSRIHGGDSPVECGECGELCWSREGLAAHARSRHPHAPPRPRHDPHIDLIDSNSGDDMDYRLSPESNRSRGSMERTVMDTLRGPTLFCQDCGVAFQRADLLRRHVAAAHRSRGSMERTVMDTLRGPTLFCQDCGVAFQRADLLRRHVAAAHSYKRHDTDGSHACDVCGETCEDALQLLAHAEMHHQRPTPRLKKMGRGRNNTSTSNSSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDKRANGGLPYYCVVCGRTMHTSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKMKSESTPTVEWSRSPSPAPESPRHSPSASPLASPPASPAPSPPPGLRRRPRRAAKRVPPPPPPPRPRMIHTAEPRPRTKQVRSRRPPRHPADDLRAIQPALRSPSPASPVLSPSPTPSVQVKSEPDELASEDGPFKCEMCSLEFTRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00355498;
- 90% Identity
- -
- 80% Identity
- -