Cdea021615.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282400.1:8625513-8648613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00046 0.054 15.2 0.2 2 23 141 162 140 162 0.93 2 11 0.00067 0.078 14.7 2.4 1 23 168 190 168 190 0.96 3 11 0.00016 0.018 16.7 0.6 1 23 291 313 291 313 0.98 4 11 4.6 5.3e+02 2.6 0.0 2 23 320 342 319 342 0.90 5 11 0.0007 0.081 14.6 0.0 3 23 396 417 394 417 0.90 6 11 0.12 14 7.6 0.8 1 23 428 450 428 451 0.93 7 11 3.6e-05 0.0042 18.7 0.2 1 23 477 499 477 499 0.98 8 11 0.00072 0.083 14.6 0.2 1 23 505 527 505 527 0.97 9 11 0.00041 0.047 15.4 0.3 1 23 533 555 533 556 0.95 10 11 0.004 0.46 12.3 0.3 1 23 569 591 569 591 0.97 11 11 0.0029 0.34 12.7 0.1 1 20 760 779 760 782 0.93
Sequence Information
- Coding Sequence
- ATGGATGCTGATGGGGAGGACTACCTCCACTGGGAGGAGGAAGTGGAGATTAAGCACTCTGCAGTTCAAGGAGCGAATGTTGCCGGAATATATTCCCTTGAGAATATACAGGAGGGATCATATTCAAACATTGCTACTGAAGAAATGAAACAGAACACACACCAGATGGCAGCAGAGAACTTGATGTATTTGTCACAGGATGTTGTTAGTTTCACGGAGGCAGAGGAGCTGGATCCCAGTGTTGAGTGTGTCACTGAGGAGGTTGTCACTGATGACTGGGTCACACCTGGTGGTCTGGAAGATAGGGTTGAAGTACCGATGGAACATCTAGCAAATCCTGTTTCTGATGTAAAAGAAGATAATGACATTGATGTACCGCTACCTACAGATCAAGACGAATACACAGCGATGCGGCCGTGGCCGTGCGACTTTTGCTCGCGGCGGTTCCGCAAGAAGGCCGCTCTCATGAACCACATGGTGGCGCATCAGAATGACCGCCCGCATGCCTGCAACCTCTGCGGAGTGCGATACGTGCGCAAATGCGACCTCATGAACCATCTGAAAGTCCACGCTTTTGTGCCGGACAACCACACTGGGGACTATGATGATATGTTGGATGCTACACAGATAGTCAAACCAAAGAAGAAACGTGGAAGGCGGAAAAAGAATCCAGAGCCTGTGGAGGAGAGCGAGATGTGGGAAAACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGCGCGCGGGAGccggcgccgcccgcgcccctcCCCCCGTCGCCCCCCTCGCCCGCCTCCCCGTCCCCCTCCCCCGCCTCCCCCGAGCCCCCGCCgtccccgccgccgccgcccgccgacCCTTCCCGCCCTTTCGTCTGCCGCCACTGCGGTGTCGGCTTCGCGAGGGAGAAAGCGCTGCAGAGCCATTCCAGAATCCACGGCGGCGACTCGCCGGTGGAGTGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGGGGCTGGCTGCGCATGCGCGCGCGCGCCACCCGCACgcgccgccgcgcgcgcgccgcgaCCCGCACCCCGACCTCGCCGACTCCAACTCCGgtgaCGATATGGACTTCAGACTATCCCCGATATCGAACAGAAGTCGGGGCAGCATGGAGCGCACAGTAATAGACGCGTTACGAGGGCCCACGCTCTTCTGCCAGGACTGCGGCGTCGCCTTCCAGAGGGCCGACCTGCTGAGGCGGCACGTCGCCGCCGCGCATAGCTACAAGCGGCACGACACGGACGGGTCGCACACGTGCGACGCGTGCGGCGAGACGTGCGAGGACGCGCTGCAGCTGCTGGCACACGCCGAGCTGCACCACGAGCGCCCCACGCCCAGGTTAAAAAAGATGGGTCGAGGTCGTAACATTACGTCGACATCGAATAGCTCGCGACAATTCCCATGCAGGGAGTGTGGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGGCCGTACGCGTGCCGCTTCTGCTGGAAGGCCTTCGCCGACGGCGGCACGCTGCGCAAGCACGAGCGCATACACACCGGCGAGAAGCCGTACGCGTGCGCGGTGTGCCCGCGCGCCTTCAACCAGCGCGTGGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACAAGCGCGCCAACGGCGGCCTGCCGTACTACTGCGTGGTGTGCGGGCGCACGCTGCACTCGAGCGCGGAGCTGGTGCAGCACCTCATCCAGCACTGCGACGCCAACACCGCGCTCAAGCGGCAGCCGCAGACCGGTCCCCGCAAATACAAGCGGCGGCGGAAACTGAAGAGCGAGAGCACGCCGCCGCCCGATTGGTCGCGGTCACCGTCGCCTCCGGGTGAAGCGGGCGAGTCGCCGCGCCGCTCGCCCGCGGCGTCTCCGCGCGAgtcgcccgcgcccgcgcccgcggccCGCGCCGCCTCGCCACCGGCCgagccgcgccgccgcccgcgccgcgccgcgcgccgcgtcccgctgccgccgccaccaccacgCCCGCGCATGATACACACGGAGGAGCCTCGTCCGCGGACCAAGCAGGTGCGCAGTCGACGGCCGCCGCGGCACCCGGCGGACGACCTGCGCGCCATCCGGCCGGCGCTGCGCTCGCCCTCCCCCGCCTCCCCCCCGTCATCCGCGTCCCCCTCACTCGGTCCTTCCCCCACGCCGTCCCTGCACGTCAAGTCCGATCCCGACGACACTCGCGCCGAGGGACCCTTCAAGTGCGAGATGTGCTCGCTGGAGTTCTCGCGGCGCGACGCGCTGCTGTTGCACGTGCCGGTGCACATATGA
- Protein Sequence
- MDADGEDYLHWEEEVEIKHSAVQGANVAGIYSLENIQEGSYSNIATEEMKQNTHQMAAENLMYLSQDVVSFTEAEELDPSVECVTEEVVTDDWVTPGGLEDRVEVPMEHLANPVSDVKEDNDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNHTGDYDDMLDATQIVKPKKKRGRRKKNPEPVEESEMWENMTSARTQQWSRRAREPAPPAPLPPSPPSPASPSPSPASPEPPPSPPPPPADPSRPFVCRHCGVGFAREKALQSHSRIHGGDSPVECGECGELCWSREGLAAHARARHPHAPPRARRDPHPDLADSNSGDDMDFRLSPISNRSRGSMERTVIDALRGPTLFCQDCGVAFQRADLLRRHVAAAHSYKRHDTDGSHTCDACGETCEDALQLLAHAELHHERPTPRLKKMGRGRNITSTSNSSRQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDKRANGGLPYYCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKSESTPPPDWSRSPSPPGEAGESPRRSPAASPRESPAPAPAARAASPPAEPRRRPRRAARRVPLPPPPPRPRMIHTEEPRPRTKQVRSRRPPRHPADDLRAIRPALRSPSPASPPSSASPSLGPSPTPSLHVKSDPDDTRAEGPFKCEMCSLEFSRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00356692;
- 90% Identity
- -
- 80% Identity
- -