Basic Information

Transcription Factor Domain

TF Family: PC4
Domain: PC4 domain
PFAM: PF02229
TF Group: Unclassified Structure
Description: This domain is found at the C-terminal end of Activated RNA polymerase II transcriptional coactivator p15 from humans, YdbC from Lactococcus lactis, and other PC4 family members. p15 has a bipartite structure composed of an N-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain [1-4]. Activity is controlled by protein kinases that target the regulatory domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.052 1.3e+03 0.4 0.0 32 47 14 29 3 34 0.69

2 9 0.012 3e+02 2.4 0.0 32 44 30 42 26 45 0.90

3 9 0.0012 28 5.7 0.0 29 44 43 58 40 67 0.85

4 9 0.068 1.7e+03 0.0 0.0 32 48 70 86 62 89 0.75

5 9 0.015 3.5e+02 2.2 0.0 32 44 86 98 85 99 0.89

6 9 0.00098 24 5.9 0.0 29 44 98 114 91 120 0.84

7 9 0.0096 2.3e+02 2.8 0.0 32 44 126 138 122 143 0.87

8 9 0.001 25 5.9 0.0 29 44 138 154 131 159 0.84

9 9 0.001 25 5.9 0.0 29 45 155 171 152 175 0.84

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.052	1.3e+03	0.4	32	47	14	29	3	34	0.69
2	9	0.012	3e+02	2.4	32	44	30	42	26	45	0.90
3	9	0.0012	28	5.7	29	44	43	58	40	67	0.85
4	9	0.068	1.7e+03	0.0	32	48	70	86	62	89	0.75
5	9	0.015	3.5e+02	2.2	32	44	86	98	85	99	0.89
6	9	0.00098	24	5.9	29	44	98	114	91	120	0.84
7	9	0.0096	2.3e+02	2.8	32	44	126	138	122	143	0.87
8	9	0.001	25	5.9	29	44	138	154	131	159	0.84
9	9	0.001	25	5.9	29	45	155	171	152	175	0.84

Coding Sequence: ATGGATAGAGGTGTTACTTTACCTGTGGATAGAGATGTCACCTTACCCGTGGATAGTGGTGTTACTTTACCCATGGATAGATGTGTTACTTTACCCATGGATAGAGGTGTCACCTTACCCGTGGATAGTGGTGTTACTTTACCCATGGATAGAGGTGTCACCTTACCCGTGGATAGTGGTGTTACTTTACCTGTGGATAGAGATGTCACCTTACCCGTGGATAGTGGTGTTACTTTACCCATGGATAGATGTGTTACTTTACCCATGGATAGAGGTGTCACCTTACCCGTGGATAGTGGTGTTACTTTACCCATGGATAGAGGTGTCACCTTACCCGTGGATAGTGGTGTTACTTTACCCATGGATAGATGTGTTACTTTACCCATGGATAGAGGTGTCACCTTACCCGTGGATAGTGGTGTTACTTTACCCATGGATAGAGGTGTCACCTTACCCGTGGATAGTGGTGTTACTTTACCCATGGATAGAGGTGTCACCTTACCCGTGGATAGATGTGTCTACTTACCCGTGAAAGAGGTGTCCCCTCTCCTCTTACCTACCCGCGAGTGCGGCACAGTCCTGTCCTTAGGCAGTTGCACAGGGACAGGAGTCTCCACTTGCACGGTCACCGCCTCCATGGTGAGCACGAGCCGCGCCGGCCGCGGTCGCGACTTGCCGTCCGACACCTGCACCATCCCTGTGCGGATCTGCAAGTGA
Protein Sequence: MDRGVTLPVDRDVTLPVDSGVTLPMDRCVTLPMDRGVTLPVDSGVTLPMDRGVTLPVDSGVTLPVDRDVTLPVDSGVTLPMDRCVTLPMDRGVTLPVDSGVTLPMDRGVTLPVDSGVTLPMDRCVTLPMDRGVTLPVDSGVTLPMDRGVTLPVDSGVTLPMDRGVTLPVDRCVYLPVKEVSPLLLPTRECGTVLSLGSCTGTGVSTCTVTASMVSTSRAGRGRDLPSDTCTIPVRICK

Sequence clustering based on sequence similarity using MMseqs2