Cfla006266.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_947284805.1
- Location
- OX369305.1:11427004-11470339[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-77 4.2e-73 247.7 22.2 1 270 126 397 126 414 0.88 2 2 0.0022 55 4.3 7.1 1 53 417 468 417 488 0.72
Sequence Information
- Coding Sequence
- ATGGGCAAGCGAGTCGAGATGTCGACACCTGACAATAGCGACGAAGAAAGTGGCGAAGTCTTCACCGATGGGGACTTTGATTATTCGGATGAAGAACCCATCGTTGAACTCGTCAATAATGAACCCAACAGTTCTATTCCAGTTAATGAAACACTTAACATGGATGTTAAAGCAGAACTTAACAGCAAAAGTGATAGTAACGGACTAAATGGAGATGATCCTAAACTCAATGGACACAAAAATGGAACTGGATCAGACACAAGTTATACCAGTGGTGTTGGTGATCCACCAATGTTAGCTTTCAGAAGAGATTCGCATGGAGAACAAATAGTAAACCCATCGATCGTTGGCATTCTTGGTGATCAGCAGAATCATGCAGAACAGCGGCTGGCGGCGCGACGGGCAGCGCGGGCGGAGGCGCGCGAGATACGCATGCGCGAACTGGAGCGGCAGCAGCGCGAGCAGGAGAACAATGCCGACAAGGCTTACGACATGTACTCAGAGACGGTGGTGCGTGGCGGTCGCACGAGACTTGCGGGGCTCAGCCCCTCCACCGGATTACATTCGCCGCGGCGGAGCTCCGAAGACTCCGCCGATGACGTGTTTAGCATCAAGGACCTTAGGCACGAGCTGAAGGAAGTTGAGGAGAAGTTCCGTAAGGCGATGATCCTGAACGCGCAGCTAGACAACGACAAGGCGGCGCTCGGATATCAGTTGGAGCTGCTCAAGGACCGGATAGAGGAGTTGCAAGAGGAGTATGCGCAATTACAGCGAGAACACAAAGAGAAATGCTCGGCGCACGAGCGTTTAAAACGCGAGCACGCAACATTAGAACACGAATTGACCGGCGCGCGCGACTCCGTGCGAGCGCGGGACGCCGCCGCCGCCGCCGCGGGGTTCGCCTTTGTGGAGGCGACCATGAGCGAGGAAGTTGAGGGGGCGGAAGGGGAGGGTTATGTGGTAGGGGAAGGGTTCGGCTCTGTGCCGCCCTTGGCGCTGGTGTCGCGAGTCAACGAGCAGATGCTGAATGAAGCGGGAGAGGGGACGCTAGATGTGCGATTACAAAAGCTGGTCTCATCAAAGCTGGCGCTGGAATCAGAAGTGCGTAAACTAAAGCTGACGTTGAATGATGAGCGTGCCGCGCGGCAGAACGGTGTGGCGAACCATCACGACCAGGAGTACGAGAACGAATTGGAAGCGCTCCGTAAATCGAATGCCGAAGCTAAAGGCCGCGCGGCTCGGGCGGAGGCTGAAGCGGCACTACAAGCCGCCGCCGTAGCGCGGCTCGAGGCGCAAGTGGCGCGGCTCAAGGCGCGCCATGACCACCAGGAGGAGCAGGAGGAGCACTTGAAGCAGGAGCGACGCCGGCTGCAGAGAGAGGTACGTCCTATAAGCCGCACTACAAGCTACCACCGTGGTGCGACTCGAGGCGCAAGTGGCACGGCTAAAGGAGCAGGAGGAGCACTTGAAGCAGGACCGCCGCCGCTTGTAGACAGAGGTACGGCTTATAAGCCTCATTACAAGCCGCCCCCGTGGCGCGGTTCAAGGTGCAAGTGGCGCGGTTCAAGGCGCGCCATGACCACCAGGAATAGCAGGAGGAAGGAACACTTGAATATGTAG
- Protein Sequence
- MGKRVEMSTPDNSDEESGEVFTDGDFDYSDEEPIVELVNNEPNSSIPVNETLNMDVKAELNSKSDSNGLNGDDPKLNGHKNGTGSDTSYTSGVGDPPMLAFRRDSHGEQIVNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYSETVVRGGRTRLAGLSPSTGLHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAHERLKREHATLEHELTGARDSVRARDAAAAAAGFAFVEATMSEEVEGAEGEGYVVGEGFGSVPPLALVSRVNEQMLNEAGEGTLDVRLQKLVSSKLALESEVRKLKLTLNDERAARQNGVANHHDQEYENELEALRKSNAEAKGRAARAEAEAALQAAAVARLEAQVARLKARHDHQEEQEEHLKQERRRLQREVRPISRTTSYHRGATRGASGTAKGAGGALEAGPPPLVDRGTAYKPHYKPPPWRGSRCKWRGSRRAMTTRNSRRKEHLNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -