Cfla024103.1
Basic Information
- Insect
- Coleophora flavipennella
- Gene Symbol
- -
- Assembly
- GCA_947284805.1
- Location
- OX369291.1:12175503-12177218[-]
Transcription Factor Domain
- TF Family
- SRF
- Domain
- SRF domain
- PFAM
- PF00319
- TF Group
- Helix-turn-helix
- Description
- Serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [2], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation [1]. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic α-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel β-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see (IPR002487).
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.016 2e+02 2.9 0.1 10 23 18 31 17 33 0.89 2 19 0.016 2e+02 2.9 0.1 10 23 47 60 46 62 0.89 3 19 0.016 2e+02 2.9 0.1 10 23 76 89 75 91 0.89 4 19 0.016 2e+02 2.9 0.1 10 23 105 118 104 120 0.89 5 19 0.016 2e+02 2.9 0.1 10 23 134 147 133 149 0.89 6 19 0.016 2e+02 2.9 0.1 10 23 163 176 162 178 0.89 7 19 0.016 2e+02 2.9 0.1 10 23 192 205 191 207 0.89 8 19 0.016 2e+02 2.9 0.1 10 23 221 234 220 236 0.89 9 19 0.016 2e+02 2.9 0.1 10 23 250 263 249 265 0.89 10 19 0.016 2e+02 2.9 0.1 10 23 279 292 278 294 0.89 11 19 0.016 2e+02 2.9 0.1 10 23 308 321 307 323 0.89 12 19 0.016 2e+02 2.9 0.1 10 23 337 350 336 352 0.89 13 19 0.016 2e+02 2.9 0.1 10 23 366 379 365 381 0.89 14 19 0.016 2e+02 2.9 0.1 10 23 395 408 394 410 0.89 15 19 0.016 2e+02 2.9 0.1 10 23 424 437 423 439 0.89 16 19 0.016 2e+02 2.9 0.1 10 23 453 466 452 468 0.89 17 19 0.016 2e+02 2.9 0.1 10 23 482 495 481 497 0.89 18 19 0.016 2e+02 2.9 0.1 10 23 511 524 510 526 0.89 19 19 0.016 2e+02 2.9 0.1 10 23 540 553 539 555 0.89
Sequence Information
- Coding Sequence
- ATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACACTTCATACAACGGGCCAGAAATGACATTTCAAAAAAGGAATGACGGAACAAACAAAATGGCGGCGAAATCTTATACGTTCGACAACCAAACTGTAACCAATCTGTATCGATCTGGGTGA
- Protein Sequence
- MAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNTSYNGPEMTFQKRNDGTNKMAAKSYTFDNQTVTNLYRSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -