Cdea038607.1
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- -
- Assembly
- GCA_958295455.1
- Location
- OY282417.1:1644278-1646665[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.2e-06 0.00037 22.0 4.1 1 23 7 30 7 30 0.95 2 20 0.00052 0.06 15.0 0.3 2 23 36 58 35 58 0.94 3 20 1.6e-05 0.0019 19.8 0.3 2 23 67 89 67 89 0.97 4 20 7.9e-07 9.1e-05 23.9 0.7 2 23 98 120 97 120 0.95 5 20 2.2e-05 0.0026 19.3 0.8 2 23 128 150 128 150 0.95 6 20 6.6e-06 0.00076 21.0 0.9 2 23 158 180 157 180 0.96 7 20 6.7e-07 7.8e-05 24.1 1.0 1 23 186 209 186 209 0.98 8 20 0.0013 0.15 13.8 1.7 1 23 217 240 217 240 0.95 9 20 2.8e-05 0.0032 19.0 0.3 1 23 263 286 263 286 0.98 10 20 0.0018 0.2 13.4 0.5 1 23 317 340 317 340 0.97 11 20 3.3 3.9e+02 3.1 1.2 2 21 348 367 347 368 0.91 12 20 0.026 3 9.7 4.2 1 23 376 399 376 399 0.95 13 20 0.0011 0.13 14.0 5.5 1 23 423 446 423 446 0.97 14 20 8.9e-05 0.01 17.5 0.9 2 23 453 475 452 475 0.96 15 20 3.5e-05 0.004 18.7 2.2 2 23 482 504 481 504 0.94 16 20 0.0081 0.93 11.3 2.2 1 23 510 533 510 533 0.97 17 20 1.7 2e+02 4.0 5.8 2 23 541 563 541 563 0.95 18 20 2.2e-05 0.0026 19.3 0.9 1 23 570 593 570 593 0.98 19 20 0.35 41 6.1 3.8 1 21 600 620 600 623 0.87 20 20 0.024 2.8 9.8 2.2 5 23 640 659 637 659 0.89
Sequence Information
- Coding Sequence
- ATGTTTGCCAATTTGGATTACGTTTGTGACTATTGCAGTCGCACTTTTACCAGGAAATATAACTTGCAAACGCACATAGAGAATTGTCATATAAACTCTTCGTGCTCTTGCGATGTTTGTGGCCAGACCTTCGGCAGTCCGGCCGGCTTGCAGCTCCATTACAGCCGCGGTCACAACAGATACAGTCAACCGTTCCCCGAATGCGATGTATGCGGTCGAATCTTCACACGAAAACAAAACATTATGTCCCATATGCTCACAGTCCATTTACACGGCATCGGCCCTGAAATACGTTGTCAATATTGCGATAAAGTGTTCGCTACTGAAAGAAATCTCAAGAGACACATCAATCAACTCCACAATCCAGATGTGGAATATCCTACTTGCGATGATTGTAATAAAGTGTTCAAAGGTAAACACTCGCTAATAGCTCATATCCAAGCTACACATAACACAGAAAAGTGTACTAATAAATGTGAACTTTGCGATAGAGCTTATACCAATAGCAGAAACTTAAAAAGACATATAGAAATGTTTCACGGCGAGAAAGAAGAGTTTAGATGTGATATTTGTCCAAAAGTATACACCTCAAATCAGAGTTTAAAAAGACACGCACGGACTACGCACAATGCTGACGATCAAGATGAATTTAGATGTGACTATTGTCTTAAAACATTTATTGGAAAAGATAATTTCGATAGTCACATACAGTTTTATCATAAAGATGATAATACTAATTCAGACGATTCGAATACAAACGATATGTCAATGgatgataaaatatatttcagcTGCGAAAACTGTGACAAATTCTTCGATGATGAACCATCGTTAAGAGCGCACGTGAAGACTGACCATACTTTTGAAATATTCTACGAATACTGCAGAAAATCTCTATTGAGACAGACTGTTGAAAATCCACCAGATAAGCACATAACTAACTGTTTTTACAACTGCGAATTCTGTAACAATGCTTTTATGAGCGTTTACGAATTAAAAGATCACATGAAAGTGAGTCACGACAAGGAATATTCTTTATCAACTTGCAATGTGTGTTTTAGCAAGTTTTATAGCAAGGACTTTATGTTTGAACATAAAAAGATATGTACACCACCAGATAATGTACACTCATGTAGCCACTGTGATAAACTCTTCACAGATATATCTAGTTTGGAATTTCATACGCGCATTTTCCATCCACAAGCTCAAATTGCTGATTCCAACATCTCGTCAACCAACATTGAAGATTCTTTGGACAGTGGAAATTTTAAATGTGAACATTGCGACAGAGTTTATTATAGCGACAGGTCACTAAAACATCACATAAAATTAAAGCATACCACCGATGAAGAAGTTGAATGCGAGATTTGCAGTAAAATTTGcaataataagtattatttggCTTCACACATGAAAATGGTTCATAACAACGACAGTTGGTCAAAATGTGATTACTGCGATAAACAGTTCAAATCGAAAAGGAATATTCGACGACATATTGAATACACACATTTAGGTATGCAAAGATACAAGTGCATTGAATGTGAAACTTTATTTAAGGAGAAAAGGAGTCTAAGGAAACACGTGAGAACCAAACATCCAAATTCAGCAACCTTTCCTCAATGCCACTTCTGTTATAAACGGTTTGAATCAGCGAAATCGtgtaaaatacatttgaaactGTTGCATTCGTTTAATATGAACACATATCCATGTCATTTATGCTCGGTTTCTTTCAGCTCAAATGAAGCTCTAAGTATCCATTTGAGAACAAAACATTTGGCTGAAGATGAAATATACAAATGCGAGGAGTGCAATCTCGTTTTCAAAGGACATGAAAAGTTCGATCAGCACAACGAATTATGTCACGTAAATCTATTTCCTAATATAAAACAGAAAGTGCTACCTCGATGTATTATTTGCATCAAGGATTTCAGCACACGGAAGACTTTAAAACGCCACATCAAGAAATTCCACGATGAATTCGATGTTGATGAGCTAGCCACATACGGTTCCCGAAAACGCGTTTTCACCGTCGAATGTGAGGATTGTATCAAAAAATTCAAGGATGACTTTTATTACAACATCTATTTGAAACTTAAACACTTACGCGATTCAGTTATATTTAAATGCGAAGCTTGTTGCTCGTCGTACAATTCCTTGGAATATTCTATACAGAGGTACAAGTTGGTGAATTTTGAATTATACAGAAGTAAAATGATTCTGAGTGAGTTGTGTACGGCTGAAATGAGCGATGCTGATAATGATGAGGCGTCGTCTTCAGGGTTTGGGTTGTACAATGAATCAATGGAACCAGAAAGTACGACTATGGATATTAAAATTGAATTAGAAGAATTTGACATAAAGGCTGAACCTATGTCTCCATAA
- Protein Sequence
- MFANLDYVCDYCSRTFTRKYNLQTHIENCHINSSCSCDVCGQTFGSPAGLQLHYSRGHNRYSQPFPECDVCGRIFTRKQNIMSHMLTVHLHGIGPEIRCQYCDKVFATERNLKRHINQLHNPDVEYPTCDDCNKVFKGKHSLIAHIQATHNTEKCTNKCELCDRAYTNSRNLKRHIEMFHGEKEEFRCDICPKVYTSNQSLKRHARTTHNADDQDEFRCDYCLKTFIGKDNFDSHIQFYHKDDNTNSDDSNTNDMSMDDKIYFSCENCDKFFDDEPSLRAHVKTDHTFEIFYEYCRKSLLRQTVENPPDKHITNCFYNCEFCNNAFMSVYELKDHMKVSHDKEYSLSTCNVCFSKFYSKDFMFEHKKICTPPDNVHSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNISSTNIEDSLDSGNFKCEHCDRVYYSDRSLKHHIKLKHTTDEEVECEICSKICNNKYYLASHMKMVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSATFPQCHFCYKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALSIHLRTKHLAEDEIYKCEECNLVFKGHEKFDQHNELCHVNLFPNIKQKVLPRCIICIKDFSTRKTLKRHIKKFHDEFDVDELATYGSRKRVFTVECEDCIKKFKDDFYYNIYLKLKHLRDSVIFKCEACCSSYNSLEYSIQRYKLVNFELYRSKMILSELCTAEMSDADNDEASSSGFGLYNESMEPESTTMDIKIELEEFDIKAEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00356661;
- 90% Identity
- -
- 80% Identity
- -