Cdea009195.2
Basic Information
- Insect
- Coleophora deauratella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_958295455.1
- Location
- OY282391.1:2002503-2019220[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 8.5e-77 1.8e-72 245.4 22.2 1 269 119 393 119 411 0.89 2 6 2 4.3e+04 -7.6 14.1 1 45 412 470 412 527 0.69 3 6 0.92 2e+04 -4.3 5.4 125 162 636 673 629 677 0.80 4 6 2 4.3e+04 -7.5 5.3 4 4 727 727 686 783 0.57 5 6 2 4.3e+04 -7.6 5.6 42 42 765 765 724 824 0.55 6 6 0.62 1.3e+04 -3.7 6.5 19 164 862 896 846 907 0.37
Sequence Information
- Coding Sequence
- ATGGGCAAACGAATCAAGATGTCGACACCTGACATCAGTGACGAAGAAAGTGGCGAAGCCTTCACCGATGGGGATTTCGAGGATTCCGACGAGGAACCCATCGTTGAACTCCAAGAGAGTGATCCTAATAATTCTTTTCCAGTTAATGAAACACTTAACATGGATGTTAAAGCAGACCTTAGTAATGGACTAAACGGAGATCATTCTAAAGTCAACGGACTCAAAAATGGAACTCGATCAGATTCAAGTTACACCAGTGGCGATCCACCAATGTTAGCTTTCAGAAGAGATTCGCACGGAGAACAAATTGTAAACCCGTCTATTGTTGGGATACTTGGTGATCAGCAGAAtcatGCAGAACAGCGgctggcggcgcggcgggcggcgcgggcggagGCGCGCGAGATACGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGAACAACGCCGACAAGGCCTACGACATGTACTCGGAGACGGTGGTGCGCGGCGGTCGCACGAGACTGGCCGGGCTGAGCCCCGCTACAGGACTACACTCGCCGAGGCGGAGCTCCGAGGACTCCGCCGATGACGTGTTTAGCATCAAGGATCTTAGGCACGAGCTGAAGGAAGTGCAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGATAACGACAAGGCGGCGCTGGGATACCAGCTCGAGCTGCTCAAGGACCGGATAGAGGAGCTGCACGAAGAGTATGCTCAGCTACAGCGGGAACACAAAGAGAAATGCTCAGCGCACGAGCGTTTAAAACGGGAGCATGCTACGTTAGAACACGAGTTGACTGGCGCGCGGGACTCCGTCCGAGCGCGGgacgcggccgccgccgccgcggggtTCGCCTTCGTGGAGGCCGCCATGAGCGGGGCGAGGgatggggagggggaggaggGGCAGGGTGTTGTGGTGGGGGAGGGGTTCGGCTCCGTGCCGCCCCTGGCGCTAGTGTCGCATGCCAGTGAGCAGATGCTCAACGAAGCGGGGGAAGGAACGCTAGATGTGCGATTACAAAAGCTGGTGTCGTCGAAGCAGGCGCTGGAGTCGGAGGTGCGGCGGCTGAAGCTGACGCTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGCGGCCAGCCACCACGACCAGGAGTTCGAGAGCGAGTTGGAGGCGCTCCGCAAGAGCACCGCGGAGGCGaaggcgcgggcggcgcgcgcggaggcggaggcggcgctgcaggcggcggcggcggcgcgcctgGACGCGCAGCTGGCCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGTGAGCCCCCCCAGCCCCCCAGCCCCCCAGCCCCCCAGCTGCCGCCTGCGCGCGCGCTCCGACCACCAGGACGAGCAGGAGGAGCTGCTCAAGCAGGAGCGCCGCCGGCTGCAGCGGGAGGCGAGAGAAGCGCTGAACCGAGTAGAAGAACTGGAAACTGAGAATAGTCACCTCACGAAACGGCTCGACAAACTCAAGAACGCCAAGTCGGCTCTTCTCAAAGACCTGTGA
- Protein Sequence
- MGKRIKMSTPDISDEESGEAFTDGDFEDSDEEPIVELQESDPNNSFPVNETLNMDVKADLSNGLNGDHSKVNGLKNGTRSDSSYTSGDPPMLAFRRDSHGEQIVNPSIVGILGDQQNHAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYSETVVRGGRTRLAGLSPATGLHSPRRSSEDSADDVFSIKDLRHELKEVQEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSAHERLKREHATLEHELTGARDSVRARDAAAAAAGFAFVEAAMSGARDGEGEEGQGVVVGEGFGSVPPLALVSHASEQMLNEAGEGTLDVRLQKLVSSKQALESEVRRLKLTLNEERAARQNGAASHHDQEFESELEALRKSTAEAKARAARAEAEAALQAAAAARLDAQLARLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREVSPPSPPAPQPPSCRLRARSDHQDEQEELLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -