Cgly011292.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979637.1:1102655-1105295[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.6e-05 1 10.2 0.0 21 49 75 103 69 108 0.89 2 5 0.0004 11 6.8 0.0 21 49 156 184 150 189 0.88 3 5 0.0031 87 4.0 0.0 21 47 237 263 231 268 0.84 4 5 0.0022 62 4.5 0.0 21 48 318 345 307 348 0.82 5 5 0.0028 80 4.1 0.0 21 48 395 422 389 425 0.84
Sequence Information
- Coding Sequence
- ATGCTACCTACGAGTACCTCTTACAACTACGCCAACCTGTCCAAACATAAGCGCCTAATGCACATGAAGCTCAACAGTGTAACTCCTAACcgctatcccacttctgatcctGATTCTGAAATTCATTCAGAGGATCTTGATGAAGATGAATTTATAACAAGCGATgccattaataaaaataacaatttgaaCACGCTTATAGTCGATAGCAAGGGAGGATCAAATCAACAGCCCTGCAAATGTGCGGTTTGTCACAAAGCGTTCGACAACTACGCCAACCTGTCCAAACATATGCGCCTAATGCACATGAAGCTCAACAGTGTAACTCCTAACcgctatcccacttctgatcctGATTCTGAAATTCATTCAGAGGATCTTGGTGAAGATGAATTTATAACAAGCGATgccattaataaaaataacaatttgaaCACGCTTATAGTCGATAGCAAGGGAGGATCAAATCAACAGCCCTACAAATGTGCGGTTTGTCACAAAGCGTTCGACAACTACGCCAACCTGTCCAAACATAAGCGCCTAATGCACATGAAGCTCAACAGTGTAACTCCTAACcgctatcccacttctgatcctGATTCTGAAATTCATTCAGAGGATCTTGGTGAAGATGAATTTATAACAAGCGATgccattaataaaaataacaatttgaaCACGCTTATAGTCGATAGCAAGGGAGGATCAAATCAACAGCCCTACAAATGTGCGGTTTGTCACAAAGCGTTCGACAACTACGAAAACCTGTCCAAACATACGCGCCGAGTGCACATGAAAATCAATACTGTAACTATTAACCacaatcccacttctgatgctGATGCTGAAACTTATTCAGAGAATCTTGGTGAAgatgaaattataaaaagtgatgccattaataaaaacaacaatttgAACACGCCTAGAGTCGATAACAAGGCAGGATCGAATCAACAGCCCTACAAATGTGCGGTTTGTCACAAAACGTTCGGAAACAACGCCAACCTATCCAAACATAAGCGCCGAATGCACATGAAGCTCAATACTGAAACTTTTAACcataatcccacttctgatgctGATGCAGAGAATCTTGGTGAAgatgaaattattaaaagtgattccattaataaaaacaacaatttgAACACGCCTGCAATCGATAACAAGGCAGGATCAAATCAACAGCCCTACAAATGTGCGGTTTGTCACAAAGCGTTCGGCAACAACGCCAACCTATCCAAACATAAGCGCCGAATGCACATGAAGTTCAATACTGAAAATGTTAACCacaatcccacttctgatgctGATGCTGAAATTCATTCAGAGAATCTTGGCGAAGATGACTTTATAACAAGTGATGccattaataaaaacaacaatttgAACACGCCTACAGATAACAAGGCAGGATCGAATCAACGTAAACGCCCAAAAAAGATGGTgtctgaaaatataatttataaaaaacgcCATTCCACCTTTGATGTCAAAAATAATTTAGAGAGTATTAACGATGAAGAAGCTCTACAGAGTGACGCCATTGATAAATATAACAATTTGAACACACCTGAAATGGATAAAAAATTGGGAGAATCAAATGGACGTCAACGCCAAGCGAATATTATACTCACAAATAACCCCACGTCTGACGCTAAGCCTGAAAACCGTTCAAGGAATTTTGAAGAAGAtaaatttaaaacaagtcaTGGTCATTTAAAAGAGCCAAAAATGGAGAAAGTCGTTATATTGGATATCCAACATGTATATTATCCTATGCAAAATAACATGGTGAAGCAGGATCACATTGATATGGAGCCAGAGCCTATAGACCGCATTGATTTGGAGAAGGAGCTGCAGTTGATAGAGAATATTTCGAAGAGCGTGGATAACAAAGAAGCTGTGTATGGGGACGTGCTGTCAAATAGTAACACCTCTTTTGATTATGAAGGCATAGAAGGATTCTCCACTACAGGTTCCTCGGAACAAACCAACTACCCTCAGGAGTACGGGCCCGATTTCGCAGTCCAAGACTGCGGGATCCTCAACCTGGACGACCATATACTGCCCCACATCGATCCACTCCTCACCATCAAGACTGTGGACTATCCAACCCCCAACGGCTTCCTACCCCCAAACCACGAGGCTAGCAGCTATCAAGAATACCAAACCCCAATGTGGGAGCCCCCCATTTTCAAATGCCCGGATTACAACTACCACGGGACCAGCACGTACCAGGAATACCAAGCCCCAGGATGGGAGCCCCCAGTTTTCACCAAGGTATGTCCGGAGTACACATATTACGCGGACATGGCTGACTCGAACCGGGCCTCGATCATGAACACCGATATATTTTGA
- Protein Sequence
- MLPTSTSYNYANLSKHKRLMHMKLNSVTPNRYPTSDPDSEIHSEDLDEDEFITSDAINKNNNLNTLIVDSKGGSNQQPCKCAVCHKAFDNYANLSKHMRLMHMKLNSVTPNRYPTSDPDSEIHSEDLGEDEFITSDAINKNNNLNTLIVDSKGGSNQQPYKCAVCHKAFDNYANLSKHKRLMHMKLNSVTPNRYPTSDPDSEIHSEDLGEDEFITSDAINKNNNLNTLIVDSKGGSNQQPYKCAVCHKAFDNYENLSKHTRRVHMKINTVTINHNPTSDADAETYSENLGEDEIIKSDAINKNNNLNTPRVDNKAGSNQQPYKCAVCHKTFGNNANLSKHKRRMHMKLNTETFNHNPTSDADAENLGEDEIIKSDSINKNNNLNTPAIDNKAGSNQQPYKCAVCHKAFGNNANLSKHKRRMHMKFNTENVNHNPTSDADAEIHSENLGEDDFITSDAINKNNNLNTPTDNKAGSNQRKRPKKMVSENIIYKKRHSTFDVKNNLESINDEEALQSDAIDKYNNLNTPEMDKKLGESNGRQRQANIILTNNPTSDAKPENRSRNFEEDKFKTSHGHLKEPKMEKVVILDIQHVYYPMQNNMVKQDHIDMEPEPIDRIDLEKELQLIENISKSVDNKEAVYGDVLSNSNTSFDYEGIEGFSTTGSSEQTNYPQEYGPDFAVQDCGILNLDDHILPHIDPLLTIKTVDYPTPNGFLPPNHEASSYQEYQTPMWEPPIFKCPDYNYHGTSTYQEYQAPGWEPPVFTKVCPEYTYYADMADSNRASIMNTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354539;
- 90% Identity
- iTF_00354539;
- 80% Identity
- iTF_00354539;