Basic Information

Insect: Coenonympha glycerion
Gene Symbol: -
Assembly: GCA_963855885.1
Location: OY979640.1:13097988-13107042[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0052 0.32 12.2 0.2 2 23 152 174 151 174 0.95

2 16 0.003 0.18 12.9 0.9 2 23 430 452 429 452 0.96

3 16 0.02 1.2 10.3 0.2 1 20 460 479 460 481 0.95

4 16 0.054 3.3 9.0 0.7 2 23 491 512 490 512 0.94

5 16 1.8 1.1e+02 4.2 0.5 1 23 528 551 528 551 0.81

6 16 0.00095 0.058 14.5 3.3 1 23 560 583 560 583 0.95

7 16 0.049 3 9.1 0.5 3 23 662 683 660 683 0.91

8 16 7.6e-05 0.0046 18.0 1.8 1 23 717 739 717 739 0.96

9 16 3.3e-06 0.0002 22.3 0.8 1 23 746 768 746 768 0.98

10 16 0.00013 0.0078 17.2 2.3 1 23 773 795 773 795 0.96

11 16 0.0005 0.031 15.4 3.9 1 23 801 823 801 823 0.99

12 16 2.6e-06 0.00016 22.6 1.4 1 23 829 851 829 851 0.98

13 16 8.4e-05 0.0052 17.8 2.1 2 23 858 879 858 879 0.97

14 16 0.0002 0.012 16.6 0.5 2 23 887 909 886 909 0.97

15 16 0.0012 0.072 14.2 1.7 1 23 914 936 914 936 0.98

16 16 0.14 8.3 7.7 4.2 1 23 942 965 942 965 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0052	0.32	12.2	0.2	2	23	152	174	151	174	0.95
2	16	0.003	0.18	12.9	0.9	2	23	430	452	429	452	0.96
3	16	0.02	1.2	10.3	0.2	1	20	460	479	460	481	0.95
4	16	0.054	3.3	9.0	0.7	2	23	491	512	490	512	0.94
5	16	1.8	1.1e+02	4.2	0.5	1	23	528	551	528	551	0.81
6	16	0.00095	0.058	14.5	3.3	1	23	560	583	560	583	0.95
7	16	0.049	3	9.1	0.5	3	23	662	683	660	683	0.91
8	16	7.6e-05	0.0046	18.0	1.8	1	23	717	739	717	739	0.96
9	16	3.3e-06	0.0002	22.3	0.8	1	23	746	768	746	768	0.98
10	16	0.00013	0.0078	17.2	2.3	1	23	773	795	773	795	0.96
11	16	0.0005	0.031	15.4	3.9	1	23	801	823	801	823	0.99
12	16	2.6e-06	0.00016	22.6	1.4	1	23	829	851	829	851	0.98
13	16	8.4e-05	0.0052	17.8	2.1	2	23	858	879	858	879	0.97
14	16	0.0002	0.012	16.6	0.5	2	23	887	909	886	909	0.97
15	16	0.0012	0.072	14.2	1.7	1	23	914	936	914	936	0.98
16	16	0.14	8.3	7.7	4.2	1	23	942	965	942	965	0.97

Sequence Information

Coding Sequence: ATGACTTCTGATGAATCCGACGACGAACCACTATCGGTTTTGGCGGCAGCCAAGAAACAACAGCCTGAACAGTTCGACGATGGGGATTCGGTTAAAACTAAGAGCGACGACTCTGACAGTGATTACGGAGAAccaaaaaagaagaagaagaaaaaaaagaaaaagcttCCACCACCGAAGAAGCTGGGCGTGACCATAAGAATTAATCGTAAATTGAACACAATAGTGACTCCACCTGTGATTGCAAGGCCAGCAGATGTGTGGCTTTATTTGAAAGATTTGAACccaaccgggccttatagctGCTTGCTGTGCCCTGATTGGTTCATAAATAGGTCTAAAATGGTCCTACATTATGCTTTGAACCATAAGAAGGATTTTTGTGGGATTTGCAGATACTTTGTACCAGACAGAGAGGCCTGGTATGCTCATGAAAAATTTCACTGTCCATGGCCATGCTCCCAGTGTGTGGAGACATTCCCCACAGAAGGCCTGCTACGTCACCACCTCAGTTCAGTACACAACCTTGTCCACTGCCGTCTGTGCCACTTCAGAGTCACAGCAGATGCAGACTACAATTCACATCTATTCCAAAAACATGGCGTCACAAATGTTGCTGCGAAAGATGAGGAATTACTCTGGGAAATAGATTCAGACGCTCCCGAAAGATTCCTCTGCTTGCTTTGTATAAAAACTGAGAACATTTTACCCATTAATGTTACAGCTTTCTTCAGTCATTACATGGGTATCCATCATTTCACCCTGAAATGTCTAGCCAATGTTATATCTGGTAGAGATACACCGTTCCTAGTGAATGGTGCAGAAGTAAGCACTAGATTTCTTCAACAGCAGTTAAAAGAATATGGCAGGCTTGGATATGTAGATCTGGAGCCTAGGATCATACCAGTACCGGAAAACCAACCTTCAAATGAAACAACTGAGGCTTGTTTCAAACCAGATACCATATTGTTACCAGAGATTAAAGAAGAAAATCTCAGTGATACAGAAGTGGGAAAAGAAAATACTGTAGAAAAAGAAAACGATAACAATGACAATGATAACGAAATGAGCGAGAAAGATGAAAACAGTCAGAATGATCAAAATGATGAAACCATAGATTACAAAGGCGAAGAAGACTTTGATATAACATACACAGAAGTAATTCTCCTTGAGAAATGTTATCACAGATATATTGATACATCCTTGAATCTCATAAATGATAAGCATGTACCTGAAATATCTAATATTGATTACGAAAAAATCAAAGGTGATTTATACGTGAACCTAGAATGCTCTGTGTGTAAAAGCAGATTTGAAAATGCTTCGTCATTTACTACACATCTGAATAAAATGCATAATGTCAAAACTTTACCTCTATTTTCTTGTAGAGTTTGTGCGACTACATTTGATACTTATATGGATTTAACAAAGCATATTACTGAGGAACTGGGCGATTTTGAAGACCTATGGATATGCCAGTTTTGTGAGAAAGAATTTGACAACAGGGAGCAGACGAGAACGCATTTGACAGAGCACTGGGAGTCCTTAGATTATGATAATTGTTTCAGTCCACATTTGGGCTTCAAATGTAAATATTGTCCAACTTTGTTTTGGAACGAAAACGAAAGGGAATCACATCAGATAAATGTACACTTGAGTAAATATAAAGAAGAGTTCTATAAATGTGAGAGTTGCGACAAAATGTTTAGTGATAAGGTATGGTACATCCACCACCACATGGAAAGCCATTCAAATGCAGACGACCCTCTGTACCTTATCAAGTGCTGTCTGTGCTGCGTGGTTGAGCCCAGCTTTGACAAAATGAGGAGCCACTTTGAGGACCAACATCCCGAGATGAGGAAACTGTACTGCTCGTTAGACTCTTGCTTGTACAAACCTTTGAGTCATAGGAAATCGTTTAAATTACATGTGAAGATGATCCACGGTCCATCAGCCAAGAGCGACAAGGAGAAGCCGGTGAACTGCAACATCTGCGGGCGCGAGTTCCCCAGCGCGCGCTCGTGCAGCACGCACATGGCGCAGGTGCACGGCCCGGGCAAGTTCAAGTGCAAGCTGTGCATGGAAGTGCTGCAGACCATCGATGAGAGAAAACTCCACTACCTGCTCTGCCATCCCGGCCGTCATCCATTCGAGTGCTCGGAGTGCGGCAAGTCGTTCCAGTACAAGTCGTCGCTGTACATGCACAAGCAGGACCACCAGCCCAACAAGCAGAGCTACACGTGCAGCTACTGCGGGAAAGTGTTTGCGAAAAAGGATTCATATCGGGAGCACGTCCAGATCCACGAGGGCCCCCGGCACGCGTGCTCGTACTGCCCCATGCGGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGCCGCCACACGGGCGAGCGGCCCTACCGCTGCACGCACTGCCCGCGCACCTTCGCCGACAAGGGCGCTTGCACTGCGCACACCAGAACGCATGTAAGAGATACATCATACGCTTGCCTGTACTGCGGGCAGACGTTTGTACAGAAATCTAAGCTTACTTACCATATTAGGAAGCATACTGGAGAAAATTTGGAGTCTTGTACGGTGTGCGCGAAAGTGTTCACGAGCGCGTGCTCCCTGCGCGAACACATGAAGACCCACGTGGAAAAGAGGCAGGTCGTCAAGTGTCCGCTCTGTGACAAAAGTTACCAAGACGAGCGCTACATGCTGCGCCACCTGCGTACCATGCACACTCGCGCGCAGTTCTCGTGCCCGCTGTGCCACAAGCTGCTCACCAGCGCCTCGGGGCTGCGCCACCATGTCATCACGCACAGCGAAATCAACACTTTCCGGTGCAAATGCTGTCCGAAAACGTACGCCGTTAAAAAAACGATAATAAGGCATTTACGCAAAAGACACGGCTTACGGGGCACTGAGGTCGACCTGAAAGATTTCTACAACCGCATAGAACCGAGGGATTGCCAACTAAACCTGGATGAAGAAACCATGACCAGCATATTCGGGCCCCCTAAGAAGAAAGTACCCAATATATTAATAAGCAATTTCGTGAATTTCGCGAAGCAACCTCAAGCTGACAATGCGACAGACGGAGAATATTCTGGGGaagataatgaaaatgaaaatgatactTCAAATGAGAATAATGAAGCGTCTGCTAACGAGAGTGACAAGGAAAGCAACGATGAGAATGAGAAAGAGAAAGACGTGTGTGATGTTAAACAAGAGGTGCAGAGTGGGGATGAAGAGTTGGAGCCCACAGACTTTGTTAGTGTTAAGATTGAACCTGTGGATGAGGAACATGAATAA
Protein Sequence: MTSDESDDEPLSVLAAAKKQQPEQFDDGDSVKTKSDDSDSDYGEPKKKKKKKKKKLPPPKKLGVTIRINRKLNTIVTPPVIARPADVWLYLKDLNPTGPYSCLLCPDWFINRSKMVLHYALNHKKDFCGICRYFVPDREAWYAHEKFHCPWPCSQCVETFPTEGLLRHHLSSVHNLVHCRLCHFRVTADADYNSHLFQKHGVTNVAAKDEELLWEIDSDAPERFLCLLCIKTENILPINVTAFFSHYMGIHHFTLKCLANVISGRDTPFLVNGAEVSTRFLQQQLKEYGRLGYVDLEPRIIPVPENQPSNETTEACFKPDTILLPEIKEENLSDTEVGKENTVEKENDNNDNDNEMSEKDENSQNDQNDETIDYKGEEDFDITYTEVILLEKCYHRYIDTSLNLINDKHVPEISNIDYEKIKGDLYVNLECSVCKSRFENASSFTTHLNKMHNVKTLPLFSCRVCATTFDTYMDLTKHITEELGDFEDLWICQFCEKEFDNREQTRTHLTEHWESLDYDNCFSPHLGFKCKYCPTLFWNENERESHQINVHLSKYKEEFYKCESCDKMFSDKVWYIHHHMESHSNADDPLYLIKCCLCCVVEPSFDKMRSHFEDQHPEMRKLYCSLDSCLYKPLSHRKSFKLHVKMIHGPSAKSDKEKPVNCNICGREFPSARSCSTHMAQVHGPGKFKCKLCMEVLQTIDERKLHYLLCHPGRHPFECSECGKSFQYKSSLYMHKQDHQPNKQSYTCSYCGKVFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCTHCPRTFADKGACTAHTRTHVRDTSYACLYCGQTFVQKSKLTYHIRKHTGENLESCTVCAKVFTSACSLREHMKTHVEKRQVVKCPLCDKSYQDERYMLRHLRTMHTRAQFSCPLCHKLLTSASGLRHHVITHSEINTFRCKCCPKTYAVKKTIIRHLRKRHGLRGTEVDLKDFYNRIEPRDCQLNLDEETMTSIFGPPKKKVPNILISNFVNFAKQPQADNATDGEYSGEDNENENDTSNENNEASANESDKESNDENEKEKDVCDVKQEVQSGDEELEPTDFVSVKIEPVDEEHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00953823;
90% Identity: -
80% Identity: -