Cgly024252.1
Basic Information
- Insect
- Coenonympha glycerion
- Gene Symbol
- -
- Assembly
- GCA_963855885.1
- Location
- OY979654.1:2179745-2182078[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.5e-06 0.00034 21.5 3.9 1 23 6 29 6 29 0.95 2 20 0.0075 0.46 11.7 1.4 2 23 35 57 33 57 0.93 3 20 8.8e-06 0.00054 20.9 0.2 2 23 66 88 66 88 0.97 4 20 3.4e-07 2.1e-05 25.3 3.1 1 23 95 118 95 118 0.97 5 20 0.00017 0.011 16.8 0.1 2 23 126 148 125 148 0.95 6 20 0.00025 0.016 16.3 6.4 2 23 155 177 154 177 0.96 7 20 0.00012 0.0073 17.3 1.3 1 23 183 206 183 206 0.97 8 20 0.0036 0.22 12.7 4.2 1 23 214 236 214 237 0.96 9 20 0.00017 0.011 16.8 2.9 1 23 250 273 250 273 0.98 10 20 0.0014 0.087 14.0 1.5 3 23 308 329 307 329 0.96 11 20 0.037 2.3 9.5 2.0 2 22 337 357 337 357 0.94 12 20 0.0091 0.56 11.4 1.8 2 23 366 388 366 388 0.95 13 20 1.6 1e+02 4.3 6.8 1 23 405 428 405 428 0.95 14 20 0.0012 0.074 14.2 0.4 2 23 435 457 434 457 0.96 15 20 0.012 0.72 11.1 3.7 2 23 464 486 463 486 0.94 16 20 0.016 0.95 10.7 2.7 1 23 492 515 492 515 0.97 17 20 0.19 12 7.3 5.7 2 23 523 545 523 545 0.95 18 20 0.031 1.9 9.7 0.3 1 23 552 575 552 575 0.92 19 20 0.26 16 6.9 0.3 5 23 579 598 578 598 0.93 20 20 0.28 17 6.7 1.9 3 23 611 632 610 632 0.90
Sequence Information
- Coding Sequence
- ATGTCGGATCCGGACTACATTTGCGACTACTGCAGTCGTTCATTCACGAGGAAATACAATCTGCAGACTCACATCGAGAACTGCCATCTAAACCTGACCTGCCACTGCGAGATTTGCGACCAGGACTTCGGAAGCCCCACTGGGTTGTTTCTGCATCTCAACCGAGGCCACAACAGCTCCGGGCAACCATTCCCCGAGTGTGACATATGCGGGAGAGTGTTCACGAGGCGCCAAAACATCATCTCTCACATGGAGACAGTGCATTTGCTGAACAACTCATATTTCCCATGCCATATCTGCAAGAAGAGCTTCACTACAGCAAGAAACATGAAGCGTCACATGAAAGTTTTACACGATCCAGACGTACAGTATTTAATGTGCAACGAATGCGATAGAGGCTTCAAAGGAAAGAACTCGTTAATAGCTCACATTGAGTCCTATCATTACTCGGACGATGTATTAAAATGTCACGTGTGCGCTAAAAGGTATACGAGTAAGAAGAACCTAAAGCGACATTTGGAGACATGCCACGGTCAAAAAGGAGAGTTCAAATGCATTATATGTCCAAAAGTGTACACGTCGAGTCAAAGTTTGAGACGACACTCGAGGACTCAGCATTTAATGGAAAACCACGAGTCATATACGTGCGAGTATTGCTACAAAGTTTTGTACGGGCGTCACAATTTAGAGAGCCACGTAAGAAACCACCACCATCATCTCGATGAGACTTTTGAGTCCAAATATGATTTCTACTGTGATATATGTCACATGGCATTCAAAAAGGAGTACTTATTGAGGCAGCATGTCAAAACGACGCATACGTTTCAACAGTTCTACGATTACTGCAAGCAGTCCTTGATAAAGTCGGATGAGAAATTACAAAGACTCAAAAAGATGAAAGAGAACAGTTCTCGGCAAGCTTGCGAATATTGTTCCAGAGATTTTGAGAATGCTTGCGACTTAAAAGACCACATGAAACTCAAACACGACAGAGATTATTGCTTGGCCACTTGCAATGTGTGTTTCCAGAAGTTCTTCAGCAAAGAAACACTAAAAGAACACAAGAAAACTTGCGTGCCGCCCAAAAATGTGAACAGCTGCAGCCATTGCGATAAACTATTCACCGATGTGTCCAGTTTGGAGTTTCATTTGAGGATTTTCCACCCACAAGCGCAAATGGCAGACTCCAATAACATAGACGAGTCGGAGATGTTTAAATGCATTCATTGCGAGCAGATATACCACAATGAGAGATCTCTGAAGCACCACATGAATCTAAAACACGCCTCCAACGATCCTGTCATGTGTAAAATTTGCAGGAAGACACTGGAAAATAAATACTACCTGGCTTACCACATAAAAGTGTATCACACAACCGTTACGTACTGGAAATGCGATTATTGCGACAAGCAATTCACCTGCAAACGCAACATCAGGAGGCATATAGAGTACACACATCTAGGCATACAAAGACACAAGTGTGTCGAATGCGCAACTCTGTTTAAAGAAAAGCGCAGTTTGAGGAAGCATGTCAGGATAAAACACCCCGATTGCGCAACTTTTCCGCAGTGCCACATATGCGAGAAACGCTTCGAATCCGCAAAGTCTTGCAAGACACACCTGAAGTTGCAGCACTCCCTCAACGTGGACACGCATCCGTGCGAGTTCTGCTCCATATCATTCGACACTATCGAAGGTTTAAACTCGCATTTATCGGCCAACCATTTGACCGAGGAATGCAATCTAGTCTTTAAAGGTCAGGAGAAGTTCAACAAACACTTCGACACGTTCCATTCTGAACTACCCTCAGACGATAAAGTTTTACCGCGGTGCATTATTTGTATGAAAGATTTTAGTGCGCGCAAAACTTTGAAGCGTCACATCAAGAAGTTCCACAGCGAGTTCGATGCGGACGAATTAGCCGCGTATGGGTTTAGGAAACGCGTTTTCTCCGTCGACTGTATGGAGTGCGTTAGGAGTTTTAACGATGATTTCTACTCGGATGTCCAATTGAAACTGAAACATTCAAGGGACTCCGTGGTATTTAAATGCGGTGCATGCAACAGTTCGTACAACTCTTTGGAGTTCGCGATACATAAATACAAGCAAAGCTACGACGCGTCCCAGAGTAAGTTATACCTGAGCGAGTTGTGCACGACGCAAATGAGCGAAGATTCGGACTCCGTCGATATGAAGCCTGAAAGCACGACGGGGTATATAAAGACTGAACCGTTCGACGCTTTTGAGGAAACAGTTGAACCGGAGAGCACGATGAGTGAAATAAAAGATGAGCCGTTTATTAAAGAAGAAATTGATTCTGATGAAAATCATTAG
- Protein Sequence
- MSDPDYICDYCSRSFTRKYNLQTHIENCHLNLTCHCEICDQDFGSPTGLFLHLNRGHNSSGQPFPECDICGRVFTRRQNIISHMETVHLLNNSYFPCHICKKSFTTARNMKRHMKVLHDPDVQYLMCNECDRGFKGKNSLIAHIESYHYSDDVLKCHVCAKRYTSKKNLKRHLETCHGQKGEFKCIICPKVYTSSQSLRRHSRTQHLMENHESYTCEYCYKVLYGRHNLESHVRNHHHHLDETFESKYDFYCDICHMAFKKEYLLRQHVKTTHTFQQFYDYCKQSLIKSDEKLQRLKKMKENSSRQACEYCSRDFENACDLKDHMKLKHDRDYCLATCNVCFQKFFSKETLKEHKKTCVPPKNVNSCSHCDKLFTDVSSLEFHLRIFHPQAQMADSNNIDESEMFKCIHCEQIYHNERSLKHHMNLKHASNDPVMCKICRKTLENKYYLAYHIKVYHTTVTYWKCDYCDKQFTCKRNIRRHIEYTHLGIQRHKCVECATLFKEKRSLRKHVRIKHPDCATFPQCHICEKRFESAKSCKTHLKLQHSLNVDTHPCEFCSISFDTIEGLNSHLSANHLTEECNLVFKGQEKFNKHFDTFHSELPSDDKVLPRCIICMKDFSARKTLKRHIKKFHSEFDADELAAYGFRKRVFSVDCMECVRSFNDDFYSDVQLKLKHSRDSVVFKCGACNSSYNSLEFAIHKYKQSYDASQSKLYLSELCTTQMSEDSDSVDMKPESTTGYIKTEPFDAFEETVEPESTMSEIKDEPFIKEEIDSDENH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00353350;
- 90% Identity
- iTF_00353350;
- 80% Identity
- -