Carc025681.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:6648687-6651038[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.3e-06 0.0004 21.5 3.9 1 23 6 29 6 29 0.95 2 20 0.0073 0.54 11.7 1.4 2 23 35 57 33 57 0.93 3 20 8.5e-06 0.00063 20.9 0.2 2 23 66 88 66 88 0.97 4 20 1.9e-07 1.4e-05 26.1 2.9 1 23 95 118 95 118 0.97 5 20 0.00017 0.012 16.8 0.1 2 23 126 148 125 148 0.95 6 20 0.00025 0.018 16.3 6.4 2 23 155 177 154 177 0.96 7 20 4.4e-06 0.00033 21.8 1.3 1 23 183 206 183 206 0.98 8 20 0.011 0.79 11.1 3.4 1 23 214 236 214 237 0.95 9 20 6.1e-05 0.0045 18.2 1.9 1 23 250 273 250 273 0.96 10 20 0.00028 0.021 16.1 0.8 3 23 308 329 307 329 0.96 11 20 0.036 2.7 9.5 2.0 2 22 337 357 337 357 0.94 12 20 0.012 0.9 11.0 0.6 2 23 366 388 366 388 0.95 13 20 0.18 13 7.3 5.2 1 23 405 428 405 428 0.96 14 20 0.00052 0.038 15.3 0.4 2 23 435 457 434 457 0.96 15 20 0.011 0.85 11.0 3.7 2 23 464 486 463 486 0.94 16 20 0.019 1.4 10.4 3.0 1 23 492 515 492 515 0.97 17 20 0.18 14 7.2 5.7 2 23 523 545 523 545 0.95 18 20 0.0099 0.73 11.2 0.3 1 23 552 575 552 575 0.92 19 20 0.00083 0.061 14.6 2.4 1 23 582 605 582 605 0.97 20 20 0.27 20 6.7 1.9 3 23 618 639 617 639 0.90
Sequence Information
- Coding Sequence
- ATGACAGACCCGGACTACATTTGCGACTACTGCAGCCGTTCATTCACGAGGAAATACAACCTACAGACTCACATTGAGAACTGCCATCTCAACCTGACCTGCCACTGCGAGATCTGTGACCAGGACTTCGGGAGTCCGACGGGCCTGTTCCTCCATCTGAACCGAGGCCACAATAGTTCCGGGCAACCATTCCCCGAGTGTGACATATGCGGAAGGGTGTTCACGAGACGTCAGAACATCATCTCTCACATGGAGACAGTCCATTTGCTGAACAACTCGTATTTCCCATGCCATATCTGCAACAAGACCTTCACTACAGCAAGAAACATGAAGCGACACATGAAAGTTTTGCACGATCCAGACGTACAGTACTTAATGTGCAACGAATGCGATAGAGGCTTCAAAGGAAAGAACTCCCTAATAGCTCATATAGAGTCCAATCATTACTCGAACGATGTATTGAAATGTCATGTGTGTGCCAAAAGATATACGAGTAAGAAGAACTTAAAGCGACATTTGGAGACATGTCACGGACAGAAAGGAGAGTTCAAATGCGTAATATGTCCGAAAGTGTACACGTCGAGTCAAAGTTTGAGGCGACACTCCAGGACTCAGCATTTAATGGAAAACCACGAGTCATACACTTGCGAGTATTGCTACAAAGTTTTGTACGGACGTCACAATTTAGAGAGCCACGTCCTAAACCATCACCAACACCTCGATGAGACATTCGAGTCCAAATACGATTTCTTCTGTGAAATTTGTAACATGACTTTCAAAAAGGAGTACTTGCTGAGGCAGCATATAAAATCGACGCATACATTTCAACAGTTCTACGATTACTGCAAGCAGTCCTTGATAAAGTCTGATGAGAAATTACAAAGACTCAAAAAGATGAAGGAAAGCAATTCTCGGCAGGCTTGCGAGTATTGTCCCAGAGATTTTGAGAGCGCTTGCGATCTAAGAGACCACATGAGACTCAAACACGACAGAGATTATTGCTTGGCTACTTGCAATGTGTGTTTCCAGAAGTTCTTCAGCAAAGAAACACTAAAAGAACACAAGAAAACTTGCGTGCCGCCCAAAAATGTGAACAGTTGCAGTCAATGCGATAAACTATTCACCGACGTGTCCAGTCTGGAGTTTCATTTGAGGATTTTCCACCCGCAAGCGCAAATGGCTGACTCCAATATATTGGACGAATCGGAGATGTTTAAATGCATTCATTGCGAACAGGTCTACCACAACGAGAGATCGCTGAAACAGCACATGAAACTAAAACACGCCTCCAACGATCCGGTCATGTGTAAAATTTGCAAgaagacactggaaaataaaTACTATCTCGCGTACCACATAAAAGTGTATCACACGGCCATTACATACTGGAAATGCGATTATTGCGACAAGCAATTCACGTGCAAACGCAACATCAGGAGGCATATAGAGTACACACATCTAGGTATACAAAGACACAAGTGTCTGGAATGTGCAACGCTGTTTAAAGAGAAACGCAGTTTGCGGAAGCATGTCAGGATAAAACACCCGGATTCCGCAACATTTCCGCAGTGTCACATATGCGAGAAACGGTTCGAATCCGCAAAATCTTGCAAAACACACCTGAAATTGCAACACTCCCTTGACGTGAACACGCATCCTTGTGAATTCTGCTCCATCTCATTCGACACTCTTGAGGGTTTAAACTCGCATTTATCAGCCAACCATTTAACGGAGGACGAGATATACAAATGCCAAGAATGCAATCTAGTCTTCAAGGGTCAAGAGAAGTTCAACAAACACTTCGAGACGTTCCATTCAGAACTACCCTCAGACGACAAAGTCTTACCGCGGTGCATCATTTGCATGAAAGATTTCAGCGCGCGCAAAACTTTGAAGCGTCACATCAAGAAGTTCCATAGCGATTTCGATGCGGATGAACTAGCCGCGTACGGGTCTAGAAAACGCGTTTTTTCCGTCGAATGTATGGAGTGCGTTAGGAGTTTCAACGATGATTTCTACTCGGATGTCCATTTGAAACTGAAGCATTCAAGGGAATCCGTAGTCTTTGAGTGTGGTACATGCAACAGTTCGTACAACTCTTTGGAGTTCGCGATACACAAATACAAGCAAAGCTATGACGCGTCTCAGAGTAAGTTATACCTGAGTGAGTTGTGCACGACCCAAATGAGTGAAGATTCGGACTCCGTCGATATGAAGCCTGAAAGTACGACGGATTATATAAAGACTGAACCGTTCGAGGCTTTCGAGGAAGCCGTGGAGCCGGAAAGCACGAGTGAAATAAAAGACGAGCCGTTTATTAAAGAAGAAATTGAATATGATGAAAATCATTAG
- Protein Sequence
- MTDPDYICDYCSRSFTRKYNLQTHIENCHLNLTCHCEICDQDFGSPTGLFLHLNRGHNSSGQPFPECDICGRVFTRRQNIISHMETVHLLNNSYFPCHICNKTFTTARNMKRHMKVLHDPDVQYLMCNECDRGFKGKNSLIAHIESNHYSNDVLKCHVCAKRYTSKKNLKRHLETCHGQKGEFKCVICPKVYTSSQSLRRHSRTQHLMENHESYTCEYCYKVLYGRHNLESHVLNHHQHLDETFESKYDFFCEICNMTFKKEYLLRQHIKSTHTFQQFYDYCKQSLIKSDEKLQRLKKMKESNSRQACEYCPRDFESACDLRDHMRLKHDRDYCLATCNVCFQKFFSKETLKEHKKTCVPPKNVNSCSQCDKLFTDVSSLEFHLRIFHPQAQMADSNILDESEMFKCIHCEQVYHNERSLKQHMKLKHASNDPVMCKICKKTLENKYYLAYHIKVYHTAITYWKCDYCDKQFTCKRNIRRHIEYTHLGIQRHKCLECATLFKEKRSLRKHVRIKHPDSATFPQCHICEKRFESAKSCKTHLKLQHSLDVNTHPCEFCSISFDTLEGLNSHLSANHLTEDEIYKCQECNLVFKGQEKFNKHFETFHSELPSDDKVLPRCIICMKDFSARKTLKRHIKKFHSDFDADELAAYGSRKRVFSVECMECVRSFNDDFYSDVHLKLKHSRESVVFECGTCNSSYNSLEFAIHKYKQSYDASQSKLYLSELCTTQMSEDSDSVDMKPESTTDYIKTEPFEAFEEAVEPESTSEIKDEPFIKEEIEYDENH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354369;
- 90% Identity
- iTF_00354369;
- 80% Identity
- -